Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq115011 100 4e-16 SEQ26880 100 4e-16 SEQ23825 96.9 5e-15 >seq115011 Length=19224 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 1165 CCAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 1224 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 1225 ATTCCCCGCCGGGGAGG 1241 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 6426 CCAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 6485 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 6486 ATTCCCCGCCGGGGAGG 6502 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 12242 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 12183 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 12182 TCCCCGCCGGGGAGG 12168 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1169 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1228 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 1229 CCCGCCGGGGAGGAG 1243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 6430 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6489 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 6490 CCCGCCGGGGAGGAG 6504 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 12243 TAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 12184 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 12183 TTCCCCGCCGGGGAG 12169 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1240 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1181 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 1180 TACTACCGAGGA 1169 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 6501 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 6442 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 6441 TACTACCGAGGA 6430 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 12169 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 12228 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 12229 TACTACCGAGGA 12240 >SEQ26880 Length=12811 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 2763 CCAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 2704 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 2703 ATTCCCCGCCGGGGAGG 2687 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 7300 CCAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 7241 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 7240 ATTCCCCGCCGGGGAGG 7224 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 11854 CCAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 11795 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 11794 ATTCCCCGCCGGGGAGG 11778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2759 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2700 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 2699 CCCGCCGGGGAGGAG 2685 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7296 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7237 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 7236 CCCGCCGGGGAGGAG 7222 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 11850 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 11791 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 11790 CCCGCCGGGGAGGAG 11776 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2688 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2747 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 2748 TACTACCGAGGA 2759 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7225 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7284 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 7285 TACTACCGAGGA 7296 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 11779 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 11838 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 11839 TACTACCGAGGA 11850 >SEQ23825 Length=10857 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 5637 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 5578 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 5577 TCCCCGCCGGGGAGG 5563 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 5638 TAGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 5579 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 5578 TTCCCCGCCGGGGAG 5564 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 5564 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5623 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 5624 TACTACCGAGGA 5635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650564421274160