Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq217728 116 5e-21 seq105865 107 3e-18 seq105618 104 3e-17 seq253083 89.7 7e-13 seq150964 89.7 7e-13 >seq217728 Length=151490 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 39199 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 39140 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| |||||| || || | || |||||||| || ||| Sbjct 39139 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 39080 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || |||| || | |||||| |||| || ||||| || Sbjct 39079 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 39020 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 39019 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 38978 >seq105865 Length=238993 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||||| || | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 96362 TCCACCCTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 96303 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| ||||||||| || | || ||||| || || || Sbjct 96302 ATTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGAACTGA 96243 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| || | || ||||| || Sbjct 96242 GACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 96183 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||| |||||||| Sbjct 96182 TCCCTCAATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 96141 >seq105618 Length=129425 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 35595 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 35536 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| || ||||| || | || ||||| || || ||| Sbjct 35535 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 35476 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || ||||| || ||| ||| | |||||| |||| || ||||| || Sbjct 35475 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 35416 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||| |||||||| Sbjct 35415 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 35374 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/116 (77%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA- 69143 || |||| |||||||| ||||||||||||||||| || || || |||| | |||| || Sbjct 37066 ATGAATGTGTCTGCCAAGCCCTGAACCCCAATACCAATTGGCCTGTGTCGCATATTAGAC 37007 Query 69144 --ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 37006 CTCCTTGCAGTTTC---AACCGGATAATAATTCATATCGATTATTTTGTTTAGATT 36954 >seq253083 Length=222612 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 124369 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 124310 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| ||| | || || |||| Sbjct 124309 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCGGAGAAGA 124251 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 124250 AGATGCCCTCGAC 124238 >seq150964 Length=68769 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 25073 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 25132 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 25133 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 25191 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 25192 AGATGCCCTCGAC 25204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684509436147960