Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq234232 87.8 1e-12 seq215674 87.8 1e-12 >seq234232 Length=92786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| || ||||| ||| | || ||||| |||||||| | |||| ||||||| Sbjct 54739 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 54798 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || || || ||||| || ||| |||| || |||| |||||||||||| Sbjct 54799 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCACAA 54858 Query 41199 GTT 41201 ||| Sbjct 54859 GTT 54861 >seq215674 Length=680519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| || ||||| ||| | || ||||| |||||||| | |||| ||||||| Sbjct 28416 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 28475 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || || || ||||| || ||| |||| || |||| |||||||||||| Sbjct 28476 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCACAA 28535 Query 41199 GTT 41201 ||| Sbjct 28536 GTT 28538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396102398881195