Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27]
279,439 sequences; 15,344,693,583 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq253083 141 1e-28
seq150964 141 1e-28
SEQ56412 107 2e-18
SEQ29879 107 2e-18
SEQ21525 107 2e-18
SEQ35237 102 9e-17
seq198152 96.9 4e-15
seq189721 96.9 4e-15
seq131857 96.9 4e-15
>seq253083
Length=222612
Score = 141 bits (156), Expect = 1e-28
Identities = 120/148 (81%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| || |||| || || || || ||||| ||||||||||| || |||||
Sbjct 124207 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 124266
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 124267 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 124326
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| || |||
Sbjct 124327 GCTCATCTCCCGCGACGAGGGCCTGCAC 124354
>seq150964
Length=68769
Score = 141 bits (156), Expect = 1e-28
Identities = 120/148 (81%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| || |||| || || || || ||||| ||||||||||| || |||||
Sbjct 25235 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 25176
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 25175 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 25116
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| || |||
Sbjct 25115 GCTCATCTCCCGCGACGAGGGCCTGCAC 25088
>SEQ56412
Length=459978
Score = 107 bits (118), Expect = 2e-18
Identities = 200/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 2024 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 2083
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| |||| || || || | ||||||||||||||||| |||| || || || | |
Sbjct 2084 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 2143
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700
|| || |||| |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 2144 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 2197
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758
|| |||||||| ||||||| ||| || ||||| || ||| || | | | |||| |
Sbjct 2198 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 2255
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 2256 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 2304
>SEQ29879
Length=204390
Score = 107 bits (118), Expect = 2e-18
Identities = 200/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 120083 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 120142
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| |||| || || || | ||||||||||||||||| |||| || || || | |
Sbjct 120143 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 120202
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700
|| || |||| |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 120203 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 120256
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758
|| |||||||| ||||||| ||| || ||||| || ||| || | | | |||| |
Sbjct 120257 ACAGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 120314
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 120315 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 120363
>SEQ21525
Length=17370
Score = 107 bits (118), Expect = 2e-18
Identities = 200/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 6159 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 6218
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| |||| || || || | ||||||||||||||||| |||| || || || | |
Sbjct 6219 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 6278
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700
|| || |||| |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 6279 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 6332
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758
|| |||||||| ||||||| ||| || ||||| || ||| || | | | |||| |
Sbjct 6333 ACAGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 6390
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 6391 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 6439
>SEQ35237
Length=618294
Score = 102 bits (112), Expect = 9e-17
Identities = 201/291 (69%), Gaps = 20/291 (7%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | || ||| | | || || || ||
Sbjct 600021 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 600080
Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
| |||| || || |||||| | |||||||||||||||| |||| || || || |
Sbjct 600081 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 600138
Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 9698
||| || |||| |||||| ||| | |||||| | ||| | |||| | |
Sbjct 600139 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 600192
Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756
| || |||||||| ||||||| || || ||||| || ||| || | | | ||||
Sbjct 600193 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 600250
Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
|||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 600251 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 600301
>seq198152
Length=382733
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
||||| || || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 130092 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 130151
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 130152 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 130209
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699
|||| || || |||| || || ||| | || ||| || |||| || ||| | ||
Sbjct 130210 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 130267
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 130268 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 130323
Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| ||||| |||| ||| || | ||||||||||| || || | ||| || || | |
Sbjct 130324 CGAAGAGGTCCC--TCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGA 130381
Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 130382 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 130441
Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 130442 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 130495
>seq189721
Length=118633
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 116114 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCTGGCCTGTTGGTCGCG 116173
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 116174 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 116231
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 116232 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 116289
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 116290 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 116345
Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| ||||| |||| ||| || | ||||| || || || || | ||| || || | |
Sbjct 116346 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 116403
Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 116404 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 116463
Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 116464 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 116517
>seq131857
Length=871024
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 261706 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 261647
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 261646 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 261589
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 261588 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 261531
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 261530 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 261475
Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| ||||| |||| ||| || | ||||| || || || || | ||| || || | |
Sbjct 261474 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 261417
Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 261416 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 261357
Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 261356 CTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 261303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581223477316360
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