Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq253083 141 1e-28 seq150964 141 1e-28 SEQ56412 107 2e-18 SEQ29879 107 2e-18 SEQ21525 107 2e-18 SEQ35237 102 9e-17 seq198152 96.9 4e-15 seq189721 96.9 4e-15 seq131857 96.9 4e-15 >seq253083 Length=222612 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 124207 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 124266 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 124267 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 124326 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 124327 GCTCATCTCCCGCGACGAGGGCCTGCAC 124354 >seq150964 Length=68769 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 25235 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 25176 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 25175 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 25116 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 25115 GCTCATCTCCCGCGACGAGGGCCTGCAC 25088 >SEQ56412 Length=459978 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 2024 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 2083 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 2084 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 2143 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 2144 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 2197 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| ||| || ||||| || ||| || | | | |||| | Sbjct 2198 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 2255 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 2256 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 2304 >SEQ29879 Length=204390 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 120083 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 120142 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 120143 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 120202 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 120203 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 120256 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| ||| || ||||| || ||| || | | | |||| | Sbjct 120257 ACAGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 120314 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 120315 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 120363 >SEQ21525 Length=17370 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 6159 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 6218 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 6219 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 6278 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 6279 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 6332 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| ||| || ||||| || ||| || | | | |||| | Sbjct 6333 ACAGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 6390 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 6391 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 6439 >SEQ35237 Length=618294 Score = 102 bits (112), Expect = 9e-17 Identities = 201/291 (69%), Gaps = 20/291 (7%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | || ||| | | || || || || Sbjct 600021 TCAAAGCGTCCAGGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCA 600080 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||| || || |||||| | |||||||||||||||| |||| || || || | Sbjct 600081 ACAACAATGATGCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAGTAGCTGATTGA 600138 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 9698 ||| || |||| |||||| ||| | |||||| | ||| | |||| | | Sbjct 600139 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 600192 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 9756 | || |||||||| ||||||| || || ||||| || ||| || | | | |||| Sbjct 600193 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 600250 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 |||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 600251 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 600301 >seq198152 Length=382733 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || || ||||| || || ||||| || || | ||| | || |||||| Sbjct 130092 CGATCGAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 130151 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 130152 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 130209 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| || || ||| | || ||| || |||| || ||| | || Sbjct 130210 TAATGGTCTGCTCCCTCTCGTCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 130267 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 130268 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 130323 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||||||||| || || | ||| || || | | Sbjct 130324 CGAAGAGGTCCC--TCACCCTGGACGCGCCCACACCGACGAAGAGCTCGACGAACTCAGA 130381 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 130382 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 130441 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 130442 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 130495 >seq189721 Length=118633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 116114 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCTGGCCTGTTGGTCGCG 116173 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 116174 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 116231 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 116232 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 116289 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 116290 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 116345 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 116346 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 116403 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 116404 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 116463 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 116464 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 116517 >seq131857 Length=871024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 261706 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 261647 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 261646 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 261589 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 261588 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 261531 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 261530 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 261475 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 261474 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 261417 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 261416 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 261357 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 261356 CTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 261303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581223477316360