Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq247484 84.2 1e-11 seq239185 82.4 4e-11 seq227956 82.4 4e-11 SEQ57747 82.4 4e-11 SEQ48917 82.4 4e-11 SEQ33142 82.4 4e-11 seq7258 82.4 4e-11 >seq247484 Length=271022 Score = 84.2 bits (92), Expect = 1e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 65119 ATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCAT-TTAAAC 65177 ||||||||| || |||| ||||| |||||||||||| | ||||| ||| | || || Sbjct 19446 ATTAATATTATTGCTGCCAACAAAATCCTGAGCCATTCCTACAATTG-TGCTTGCTAGAC 19388 Query 65178 TCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAAC 65235 || |||||||| || ||| |||| ||||| || ||||| ||| ||||||| || || Sbjct 19387 TCTGCTCACCGTGGTGGTATGCTGAGTGTTCTGACACATAGCCAATAAATTGTGCCAC 19330 >seq239185 Length=279912 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 278163 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 278104 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 278103 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 278045 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 278044 TGACACATAACCAATAAACTGTGCCAC 278018 >seq227956 Length=688022 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 282783 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 282842 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 282843 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 282901 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 282902 TGACACATAACCAATAAACTGTGCCAC 282928 >SEQ57747 Length=26813 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 22164 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 22223 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 22224 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 22282 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 22283 TGACACATAACCAATAAACTGTGCCAC 22309 >SEQ48917 Length=209835 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 15935 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 15876 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 15875 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 15817 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 15816 TGACACATAACCAATAAACTGTGCCAC 15790 >SEQ33142 Length=38305 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 28857 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 28916 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 28917 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 28975 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 28976 TGACACATAACCAATAAACTGTGCCAC 29002 >seq7258 Length=85497 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 78327 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 78386 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 78387 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 78445 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 78446 TGACACATAACCAATAAACTGTGCCAC 78472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234877353388350