Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq253083 219 5e-52 seq150964 219 5e-52 >seq253083 Length=222612 Score = 219 bits (242), Expect = 5e-52 Identities = 588/875 (67%), Gaps = 33/875 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 123794 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 123853 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| ||| || Sbjct 123854 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAAC 123913 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 123914 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 123973 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 123974 CTGGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 124030 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 124031 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 124089 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 124090 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 124149 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||| | | ||||| || | | ||||| Sbjct 124150 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGAGCGC-- 124207 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 124208 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 124267 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 124268 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 124327 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 124328 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 124385 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 124386 TGCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GAC 124441 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 124442 ATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGAC 124501 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| || || |||||| |||||||| | | | || Sbjct 124502 CTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAA 124560 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | | | ||| || | ||||| ||||||||||||||| ||||||| || | || Sbjct 124561 GAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 124618 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 124619 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 124653 >seq150964 Length=68769 Score = 219 bits (242), Expect = 5e-52 Identities = 588/875 (67%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 25648 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 25589 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| | ||| || Sbjct 25588 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAAC 25529 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 25528 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTG 25469 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 25468 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 25412 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 25411 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 25353 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 25352 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 25293 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || ||||| | | ||||| || | | ||||| Sbjct 25292 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGGGAGCGC-- 25235 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 25234 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 25175 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 25174 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 25115 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 25114 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 25057 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 25056 TCCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTGTCCGAGGCCGTG-GAC 25001 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 25000 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 24941 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| ||||| |||||| |||||||| | | | || Sbjct 24940 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAA 24882 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | | | ||| || | ||||| ||||||||||||||| ||||||| || | || Sbjct 24881 GAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 24824 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 24823 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 24789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546608809730160