Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20aestivum_20[genbank_20GCA_5F002220415.2_202017-07-27] 279,439 sequences; 15,344,693,583 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq217728 114 2e-20 seq105618 111 2e-19 seq105865 105 1e-17 seq166636 84.2 3e-11 >seq217728 Length=151490 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||||| ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 39198 CCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 39139 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| |||||| || ||| ||||||||||| || ||| Sbjct 39138 TTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGAA 39079 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || |||| || | |||||| |||| || |||||||| Sbjct 39078 ACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGATT 39019 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 39018 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 38978 >seq105618 Length=129425 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||||| ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 35594 CCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCCA 35535 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| || ||||| ||| |||||||| || || ||| Sbjct 35534 TTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGAG 35475 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| || ||||| || ||| ||| | |||||| |||| || |||||||| Sbjct 35474 ACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGATT 35415 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 35414 CCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 35374 >seq105865 Length=238993 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||||| ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 96361 CCACCCTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 96302 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||||||||| ||| |||||||| || || || Sbjct 96301 TTGGATGTCCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGAACTGAG 96242 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| || | || |||||||| Sbjct 96241 ACACCAATCCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGATT 96182 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 96181 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 96141 >seq166636 Length=45847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 ||||||||||||| |||| | | | | ||| ||||||||||| |||| |||||| Sbjct 34780 TCTCTTTCATATTTGTTGTACAGATTC--TGAAACTCATCTCCCCAGCAATCAGCCAAAC 34723 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | ||| |||| | ||||| | |||||||| | ||| || | |||| || ||| | Sbjct 34722 CTGGAGCTTCACTGGGACAAAATAATGACCATTGCTCATTTTTTTGCACCCTTTCCATGA 34663 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | | |||||| ||||| |||||| ||| ||||| Sbjct 34662 ATAAATCAGGAATCCAGAGAGCATAAAAAAGATC 34629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710444129052480