Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq129631 174 2e-38 seq146710 84.2 2e-11 >seq129631 Length=630463 Score = 174 bits (192), Expect = 2e-38 Identities = 334/490 (68%), Gaps = 7/490 (1%) Strand=Plus/Minus Query 141624 ACAAAGTAATGTAATCGTTTTTTCCAA--AACGTTCCAT----CATCAAATCATTCAGTT 141677 || || ||||||||| |||||||| | | | ||| | ||| || | ||| | || Sbjct 522667 ACTAAATAATGTAATT-TTTTTTCCTAGTAGCATTCTTTGATACATTAATTTATTAATTT 522609 Query 141678 GAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAA 141737 | ||| ||||||| | |||||| | | |||||||| | ||| | |||||||| |||| Sbjct 522608 GTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAA 522549 Query 141738 CGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCAC 141797 | | | |||||||| ||| | |||||| || || ||| || |||| || || || || | Sbjct 522548 CTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTC 522489 Query 141798 GAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAA 141857 || |||||| || ||||| ||||| ||||| | || || ||||| ||||||||||| Sbjct 522488 TAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATAC 522429 Query 141858 CACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAA 141917 || ||||| | |||| || | | || | ||| || ||||| |||| Sbjct 522428 ATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAG 522369 Query 141918 CGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTTAT 141977 ||||||| || ||||| || |||| ||| | ||||| ||||||| | || | || Sbjct 522368 CGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCAT 522309 Query 141978 TGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCG 142037 | ||||| || || |||| | ||||| | ||||| |||||||| || ||||| | Sbjct 522308 TAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTG 522249 Query 142038 GAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGCTT 142097 | || | || | |||||| || || || | || || | ||| || | ||| | Sbjct 522248 GTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCAT 522189 Query 142098 CATAAAAACG 142107 |||||| || Sbjct 522188 TATAAAAGCG 522179 >seq146710 Length=16940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 72306 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 72364 |||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672 Query 72365 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 72394 | ||||||| ||||| ||| ||||||| Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539354271414320