Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_000866.4
Length=168903
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 174 2e-38
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 174 bits (192), Expect = 2e-38
Identities = 334/490 (68%), Gaps = 7/490 (1%)
Strand=Plus/Minus
Query 141624 ACAAAGTAATGTAATCGTTTTTTCCAA--AACGTTCCAT----CATCAAATCATTCAGTT 141677
|| || ||||||||| |||||||| | | | ||| | ||| || | ||| | ||
Sbjct 522667 ACTAAATAATGTAATT-TTTTTTCCTAGTAGCATTCTTTGATACATTAATTTATTAATTT 522609
Query 141678 GAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAA 141737
| ||| ||||||| | |||||| | | |||||||| | ||| | |||||||| ||||
Sbjct 522608 GTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAA 522549
Query 141738 CGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCAC 141797
| | | |||||||| ||| | |||||| || || ||| || |||| || || || || |
Sbjct 522548 CTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTC 522489
Query 141798 GAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAA 141857
|| |||||| || ||||| ||||| ||||| | || || ||||| |||||||||||
Sbjct 522488 TAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATAC 522429
Query 141858 CACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAA 141917
|| ||||| | |||| || | | || | ||| || ||||| ||||
Sbjct 522428 ATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAG 522369
Query 141918 CGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTTAT 141977
||||||| || ||||| || |||| ||| | ||||| ||||||| | || | ||
Sbjct 522368 CGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCAT 522309
Query 141978 TGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCG 142037
| ||||| || || |||| | ||||| | ||||| |||||||| || ||||| |
Sbjct 522308 TAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTG 522249
Query 142038 GAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGCTT 142097
| || | || | |||||| || || || | || || | ||| || | ||| |
Sbjct 522248 GTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCAT 522189
Query 142098 CATAAAAACG 142107
|||||| ||
Sbjct 522188 TATAAAAGCG 522179
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 72306 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 72364
|||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672
Query 72365 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 72394
| ||||||| ||||| ||| |||||||
Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539354271414320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |