Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq12 116 6e-21
seq14 104 4e-17
seq11 104 4e-17
>seq12
Length=703217322
Score = 116 bits (128), Expect = 6e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | ||||||||||| || || || || ||| | || | || |||
Sbjct 511296713 ATGCAGATATTTGTCAAGACACTAACTGGAAAGACCATCACTCTTGAAGTGGAGAGC-TC 511296655
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| |||| | || || || || ||||| |||||||| || ||||| ||
Sbjct 511296654 CGACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCA 511296595
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| || ||||| ||||| || | |||||| | || ||||| | ||||| ||
Sbjct 511296594 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGTACATTGGCGGATTACAA 511296535
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| || || || || ||| | || |||||| | || |||| ||||| ||
Sbjct 511296534 TATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTACGTGGTGGCAT 511296484
Score = 96.9 bits (106), Expect = 5e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | ||||| |||| || || || || ||| | ||| | || |||
Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || |||| | || || || || || || || || || || ||||||||
Sbjct 511296425 -GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCA 511296367
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| |||||||| || || | |||||| | || || || | |||||||||
Sbjct 511296366 GCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAA 511296307
Query 124718 TATTCAAAAAGAATCAACTTTGCAT 124742
|| ||||||||||| ||| | |||
Sbjct 511296306 CATCCAAAAAGAATCCACTCTTCAT 511296282
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| || || ||||| || ||||| || ||||||||||| |||||||| ||||| || |
Sbjct 196921800 CAGGACAAGGAAGGCATCCCACCAGACCAACAAAGGCTGATTTTTGCTGGAAAGCAGCTG 196921741
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|| ||| | || ||||||| ||||| || ||||| ||||| || || | ||||||||
Sbjct 196921740 GAAGATGGACGGACATTAGCTGATTACAACATTCAGAAAGAGTCGACACTTCATTTGGT 196921682
>seq14
Length=755408349
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || ||||| || || || | ||| |||| |
Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || |||| | ||| ||| || || || ||||| || || || || || ||
Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | || ||||| || || ||| | |||||| | || || | | ||||| ||
Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 638076816
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||||||||| ||| |||| |||||| | ||| | || ||||| ||
Sbjct 638076817 ATCCAAAAAGAATCCACTCTGCACTTGGTTCTCCGTCTCCGTGGTGGCAT 638076866
>seq11
Length=621432051
Score = 104 bits (114), Expect = 4e-17
Identities = 144/198 (73%), Gaps = 3/198 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | ||||||||||| || || || || ||| | || |||| |||
Sbjct 492790948 ATGCAGATATTTGTCAAGACACTAACCGGAAAGACCATCACTCTTGACGTTGAGAGC-TC 492790890
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| |||| | || || || || |||||||||||||| || ||||| ||
Sbjct 492790889 CGACACCATTGATAATGTGAAGGCTAAGATCCAGGATAAAGAAGGTATCCCGCCTGA-CA 492790831
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| || ||||| ||||| || | |||||| || || || | |||||| ||
Sbjct 492790830 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGAGCGCACTTTGGCAGATTACAA 492790771
Query 124718 TATTCAAAAAGAATCAAC 124735
|||||| || || || ||
Sbjct 492790770 TATTCAGAAGGAGTCTAC 492790753
Score = 102 bits (112), Expect = 1e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|| || || ||| | |||||| |||| || || || || ||| | ||| | || |||
Sbjct 492790493 ATACAGATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCC 492790434
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| |||| | || || || || || || || || || || || |||||
Sbjct 492790433 -GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCA 492790375
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| |||||||| || ||| | |||||| | || || || | |||||||||
Sbjct 492790374 GCAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAA 492790315
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|| ||||||||||| ||| | ||| | || | || | || |||||
Sbjct 492790314 CATCCAAAAAGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGG 492790267
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685
|| || || || ||||| || || || || || |||||| | |||||||| ||||| ||
Sbjct 126977171 ATGCAGGACAAGGAAGGCATCCCGCCAGACCAGCAAAGGTTAATTTTTGCTGGAAAGCAG 126977230
Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745
| || ||| | || ||||||| || || || ||||||||||| ||||| | ||||||
Sbjct 126977231 CTGGAAGATGGACGGACATTAGCTGACTACAACATTCAAAAAGAGTCAACACTTCATTTG 126977290
Query 124746 GT 124747
||
Sbjct 126977291 GT 126977292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754047697811200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |