Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 116 6e-21 seq14 104 4e-17 seq11 104 4e-17 >seq12 Length=703217322 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||||||||| || || || || ||| | || | || ||| Sbjct 511296713 ATGCAGATATTTGTCAAGACACTAACTGGAAAGACCATCACTCTTGAAGTGGAGAGC-TC 511296655 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || ||||| |||||||| || ||||| || Sbjct 511296654 CGACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCA 511296595 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| | || ||||| | ||||| || Sbjct 511296594 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGTACATTGGCGGATTACAA 511296535 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| | || |||||| | || |||| ||||| || Sbjct 511296534 TATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTACGTGGTGGCAT 511296484 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| |||| || || || || ||| | ||| | || ||| Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || || || || || || || || |||||||| Sbjct 511296425 -GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCA 511296367 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || || | |||||| | || || || | ||||||||| Sbjct 511296366 GCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAA 511296307 Query 124718 TATTCAAAAAGAATCAACTTTGCAT 124742 || ||||||||||| ||| | ||| Sbjct 511296306 CATCCAAAAAGAATCCACTCTTCAT 511296282 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || ||||| || ||||| || ||||||||||| |||||||| ||||| || | Sbjct 196921800 CAGGACAAGGAAGGCATCCCACCAGACCAACAAAGGCTGATTTTTGCTGGAAAGCAGCTG 196921741 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| | || ||||||| ||||| || ||||| ||||| || || | |||||||| Sbjct 196921740 GAAGATGGACGGACATTAGCTGATTACAACATTCAGAAAGAGTCGACACTTCATTTGGT 196921682 >seq14 Length=755408349 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || || || | ||| |||| | Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | ||| ||| || || || ||||| || || || || || || Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || || ||| | |||||| | || || | | ||||| || Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 638076816 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| |||| |||||| | ||| | || ||||| || Sbjct 638076817 ATCCAAAAAGAATCCACTCTGCACTTGGTTCTCCGTCTCCGTGGTGGCAT 638076866 >seq11 Length=621432051 Score = 104 bits (114), Expect = 4e-17 Identities = 144/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||||||||| || || || || ||| | || |||| ||| Sbjct 492790948 ATGCAGATATTTGTCAAGACACTAACCGGAAAGACCATCACTCTTGACGTTGAGAGC-TC 492790890 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || |||||||||||||| || ||||| || Sbjct 492790889 CGACACCATTGATAATGTGAAGGCTAAGATCCAGGATAAAGAAGGTATCCCGCCTGA-CA 492790831 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| || || || | |||||| || Sbjct 492790830 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGAGCGCACTTTGGCAGATTACAA 492790771 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 492790770 TATTCAGAAGGAGTCTAC 492790753 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 || || || ||| | |||||| |||| || || || || ||| | ||| | || ||| Sbjct 492790493 ATACAGATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCC 492790434 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || || || || || || || || ||||| Sbjct 492790433 -GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCA 492790375 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || ||| | |||||| | || || || | ||||||||| Sbjct 492790374 GCAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAA 492790315 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| ||| | ||| | || | || | || ||||| Sbjct 492790314 CATCCAAAAAGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGG 492790267 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || || || || ||||| || || || || || |||||| | |||||||| ||||| || Sbjct 126977171 ATGCAGGACAAGGAAGGCATCCCGCCAGACCAGCAAAGGTTAATTTTTGCTGGAAAGCAG 126977230 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | || ||| | || ||||||| || || || ||||||||||| ||||| | |||||| Sbjct 126977231 CTGGAAGATGGACGGACATTAGCTGACTACAACATTCAAAAAGAGTCAACACTTCATTTG 126977290 Query 124746 GT 124747 || Sbjct 126977291 GT 126977292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754047697811200