Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq4 91.5 1e-13 >seq3 Length=775183943 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 734717289 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 734717230 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| |||||| ||| | || || |||| |||||||||||| Sbjct 734717229 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCACAA 734717170 Query 20551 GTT 20553 ||| Sbjct 734717169 GTT 734717167 >seq4 Length=803365466 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 741333945 CAGTTTTATGTCGAGAATGGAGAATTATCCTGTCAGATGTATCAACGTTCAGCTGACATG 741333886 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| |||||| ||| | || || |||| |||| ||||||| Sbjct 741333885 GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGACGTGTATGCTTGCACAA 741333826 Query 20551 GTT 20553 ||| Sbjct 741333825 GTT 741333823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398458454887630