Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq13 102 2e-16
seq11 102 2e-16
seq12 100 6e-16
seq14 98.7 2e-15
>seq13
Length=727576108
Score = 102 bits (112), Expect = 2e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||||||| | || | ||||| || ||||||||||| ||||| || || || | |||||
Sbjct 164669605 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 164669664
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377
||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| |
Sbjct 164669665 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 164669724
Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437
||| || || |||| |||||||| ||||| | || | || |||| |||||||
Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784
Query 157438 GGGAAGCGC 157446
||| |||||
Sbjct 164669785 GGGGAGCGC 164669793
>seq11
Length=621432051
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867
||| || || ||||||||||||| ||| || ||||| |||| || ||||| || ||| |
Sbjct 597006241 AGACTTTGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATCTACTGAAAGT 597006182
Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927
|| ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| ||
Sbjct 597006181 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 597006122
Query 248928 CAAGGATGACATAGAG 248943
||||||||| || |||
Sbjct 597006121 CAAGGATGATATTGAG 597006106
>seq12
Length=703217322
Score = 100 bits (110), Expect = 6e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867
||| || || ||||||||||||| ||| || || || |||| || ||||| || ||| |
Sbjct 667361234 AGACTTTGACTACGATTTCTTTGGTTTTAAGACACTTGAGAGGTCTTATCTACTGAAAGT 667361293
Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927
|| ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| ||
Sbjct 667361294 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 667361353
Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987
||||||||| || ||| | || | || ||| | ||| | | |||||| | ||
Sbjct 667361354 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 667361413
Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020
||||| | || || || ||||| || || ||
Sbjct 667361414 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 667361446
>seq14
Length=755408349
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||||||| |||| | ||||| || ||||||||||| ||||| || || || | |||||
Sbjct 132512268 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 132512327
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377
||| ||||| ||||||| | |||||| | ||| | | | |||||| | ||| |
Sbjct 132512328 CCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 132512387
Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437
||| || || |||| |||||||| |||| | || | || |||| |||||||
Sbjct 132512388 GTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCGCA 132512447
Query 157438 GGGAAGCGC 157446
||| |||||
Sbjct 132512448 GGGCAGCGC 132512456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071714669309312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |