Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13 102 2e-16 seq11 102 2e-16 seq12 100 6e-16 seq14 98.7 2e-15 >seq13 Length=727576108 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 164669605 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 164669664 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||| | | | |||||| | ||| | Sbjct 164669665 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 164669724 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 164669785 GGGGAGCGC 164669793 >seq11 Length=621432051 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || ||||| |||| || ||||| || ||| | Sbjct 597006241 AGACTTTGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATCTACTGAAAGT 597006182 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 597006181 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 597006122 Query 248928 CAAGGATGACATAGAG 248943 ||||||||| || ||| Sbjct 597006121 CAAGGATGATATTGAG 597006106 >seq12 Length=703217322 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| ||| || || || |||| || ||||| || ||| | Sbjct 667361234 AGACTTTGACTACGATTTCTTTGGTTTTAAGACACTTGAGAGGTCTTATCTACTGAAAGT 667361293 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || || || ||||| ||| | || |||| ||||| || Sbjct 667361294 TGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATACA 667361353 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 667361354 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 667361413 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 667361414 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 667361446 >seq14 Length=755408349 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 132512268 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 132512327 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||| | ||| | | | |||||| | ||| | Sbjct 132512328 CCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCG 132512387 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| |||| | || | || |||| ||||||| Sbjct 132512388 GTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCGCA 132512447 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 132512448 GGGCAGCGC 132512456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071714669309312