Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 seq11 89.7 4e-13 >seq13 Length=727576108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || || || || || ||||||||||| || Sbjct 643789860 CCACCACGGAGCCTGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCA 643789919 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || ||||| ||| |||| || | || || ||| ||| Sbjct 643789920 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 643789979 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | | |||||| | ||| |||||| || |||| Sbjct 643789980 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCAGAGGACTCGACC 643790039 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 |||| ||||||| | |||||||| | || || ||||| || ||||| | |||| Sbjct 643790040 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAA 643790093 >seq11 Length=621432051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 |||||||| || | || || | ||| || || || || || || ||||||||||| || Sbjct 80112294 CCTCCCCGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 80112353 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || |||| || ||||| || |||| || | || || ||| ||| Sbjct 80112354 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 80112413 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || |||| | |||||| | ||| |||||| | ||| Sbjct 80112414 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACC 80112473 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| |||||||| || ||||| || ||||| Sbjct 80112474 TCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAGATCTGCAT 80112520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378654515488830