Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq13 89.7 4e-13
seq11 89.7 4e-13
>seq13
Length=727576108
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || || || |||| ||| || || || || || || ||||||||||| ||
Sbjct 643789860 CCACCACGGAGCCTGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCA 643789919
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||| || | || ||||| ||| |||| || | || || ||| |||
Sbjct 643789920 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 643789979
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || || | | |||||| | ||| |||||| || ||||
Sbjct 643789980 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCAGAGGACTCGACC 643790039
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332
|||| ||||||| | |||||||| | || || ||||| || ||||| | ||||
Sbjct 643790040 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAA 643790093
>seq11
Length=621432051
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|||||||| || | || || | ||| || || || || || || ||||||||||| ||
Sbjct 80112294 CCTCCCCGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 80112353
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | || |||| || ||||| || |||| || | || || ||| |||
Sbjct 80112354 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 80112413
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || |||| | |||||| | ||| |||||| | |||
Sbjct 80112414 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGACGACTCCACC 80112473
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||||||| | ||||| |||||||| || ||||| || |||||
Sbjct 80112474 TCAAGGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAGATCTGCAT 80112520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378654515488830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |