Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14 82.4 1e-10 seq13 82.4 1e-10 >seq14 Length=755408349 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 132512554 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 132512613 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || || || |||||| Sbjct 132512614 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 132512673 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 132512674 ATGCCCTCCAC-GCAGGCGAAGGC 132512696 >seq13 Length=727576108 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 164669891 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 164669950 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || || || |||||| Sbjct 164669951 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 164670010 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 164670011 ATGCCCTCGAC-GCAGGCGAAGGC 164670033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628643509775520