Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14 107 3e-18 seq13 96.9 5e-15 >seq14 Length=755408349 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 35287588 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 35287647 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || |||||||| ||| | ||||||||||| || || Sbjct 35287648 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 35287707 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || |||| || | || ||| || | ||||||||||| Sbjct 35287708 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 35287767 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 35287768 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 35287809 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 132512554 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 132512613 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 132512614 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 132512672 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 132512673 GATGCCCTCCACGCAGGCGAAGGCGAC 132512699 >seq13 Length=727576108 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 164669891 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 164669950 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 164669951 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 164670009 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 164670010 GATGCCCTCGACGCAGGCGAAGGCGAC 164670036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 79584464 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 79584523 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||| || || ||| | |||||||| || || || Sbjct 79584524 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 79584583 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 79584584 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 79584643 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | || |||||||| Sbjct 79584644 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 79584685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716929821259760