Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq14 96.9 3e-15
seq13 89.7 4e-13
seq11 86.0 5e-12
>seq14
Length=755408349
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| ||||| || | | ||||| |||| ||| ||| || || | |||||||| |
Sbjct 638037934 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 638037875
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| ||| || | || || | ||| ||||| ||||| || | |||||| || || | |||
Sbjct 638037874 TAGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGG 638037815
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||| || || || |||| | ||||| || ||| |||||| | ||||||
Sbjct 638037814 GATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGAC 638037755
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATT 43119
|| | || || || || ||||| || || ||||||||||| ||||| | | |||||
Sbjct 638037754 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCATCTGCATAATT 638037697
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| ||||| || | | ||||| || | |||| || ||||| | |||||||| |
Sbjct 638076864 GCCACCACGGAGACGGAGAACCAAGTGCAGAGTGGATTCTTTTTGGATGTTGTAATCAGC 638076805
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| || ||| | || || | ||| ||||||||||| ||||| ||||| || || | ||
Sbjct 638076804 AAGAGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGCTGCTGGTCTGGGGG 638076745
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || ||||| || |||| | ||||||| | | | |||||| || ||| ||
Sbjct 638076744 GATGCCCTCTTTGTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAAC 638076685
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || || ||||| || || |||||||| ||||||||
Sbjct 638076684 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 638076637
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| ||||| || | | ||||||||||| ||| |||||| || | |||||||| |
Sbjct 655249796 GCCACCACGTAGGCGGAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGC 655249855
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
|| || || | || || | || ||||| ||||| ||||| | ||| || || | ||
Sbjct 655249856 CAGAGTGCGACCATCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGAGG 655249915
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || || || || |||| | | || || || | | ||| || || ||||||
Sbjct 655249916 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTATCCGAAGACTCGAC 655249975
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || || || || || || |||||||| || || |||||
Sbjct 655249976 CTCTAGAGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 655250023
>seq13
Length=727576108
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
||||| |||| | | ||| || || | |||||||| | || || || | || ||
Sbjct 657438306 ACCAAGTGGAGGGCGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTCCATCCTCA 657438247
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
| ||| ||||||||||| ||||| ||||| || || | || | || || || || |
Sbjct 657438246 AGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 657438187
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080
||| | ||||||| || ||| || ||| || ||| || || | || || || ||
Sbjct 657438186 ATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTG 657438127
Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||| || || |||||||| ||||||||
Sbjct 657438126 CCGGTGAGGGTCTTCACAAAGATTTGCAT 657438098
>seq11
Length=621432051
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
|||||| || | |||||||| | ||||||||| | || || | || ||||| || ||
Sbjct 492790985 CTCCTTCTGAATGTTGTAATCAGCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAA 492791044
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|| | | ||||||||| | || | ||| || || || |||| | ||||| |
Sbjct 492791045 GATGAGCCTCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATT 492791104
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
| | | ||||| | ||| || |||| ||||| || || ||||| |||||||||||
Sbjct 492791105 GTCGATGGTGTCCGAACTCTCAACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCAC 492791164
Query 43098 AAAAATTTGCAT 43109
||| || |||||
Sbjct 492791165 AAAGATCTGCAT 492791176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380676433817772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |