Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 3e-15 seq13 89.7 4e-13 seq11 86.0 5e-12 >seq14 Length=755408349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| |||| ||| ||| || || | |||||||| | Sbjct 638037934 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 638037875 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | || || | ||| ||||| ||||| || | |||||| || || | ||| Sbjct 638037874 TAGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGG 638037815 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| | ||||| || ||| |||||| | |||||| Sbjct 638037814 GATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCGAC 638037755 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATT 43119 || | || || || || ||||| || || ||||||||||| ||||| | | ||||| Sbjct 638037754 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCATCTGCATAATT 638037697 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | |||| || ||||| | |||||||| | Sbjct 638076864 GCCACCACGGAGACGGAGAACCAAGTGCAGAGTGGATTCTTTTTGGATGTTGTAATCAGC 638076805 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| | || || | ||| ||||||||||| ||||| ||||| || || | || Sbjct 638076804 AAGAGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGCTGCTGGTCTGGGGG 638076745 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | ||||||| | | | |||||| || ||| || Sbjct 638076744 GATGCCCTCTTTGTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAAC 638076685 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || |||||||| |||||||| Sbjct 638076684 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 638076637 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||||||||| ||| |||||| || | |||||||| | Sbjct 655249796 GCCACCACGTAGGCGGAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGC 655249855 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || || | || ||||| ||||| ||||| | ||| || || | || Sbjct 655249856 CAGAGTGCGACCATCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGAGG 655249915 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | || || || | | ||| || || |||||| Sbjct 655249916 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTATCCGAAGACTCGAC 655249975 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || |||||||| || || ||||| Sbjct 655249976 CTCTAGAGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 655250023 >seq13 Length=727576108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| | | ||| || || | |||||||| | || || || | || || Sbjct 657438306 ACCAAGTGGAGGGCGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTCCATCCTCA 657438247 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| ||||||||||| ||||| ||||| || || | || | || || || || | Sbjct 657438246 AGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 657438187 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||||| || ||| || ||| || ||| || || | || || || || Sbjct 657438186 ATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTG 657438127 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| |||||||| Sbjct 657438126 CCGGTGAGGGTCTTCACAAAGATTTGCAT 657438098 >seq11 Length=621432051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | ||||||||| | || || | || ||||| || || Sbjct 492790985 CTCCTTCTGAATGTTGTAATCAGCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAA 492791044 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | | ||||||||| | || | ||| || || || |||| | ||||| | Sbjct 492791045 GATGAGCCTCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATT 492791104 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||| || |||| ||||| || || ||||| ||||||||||| Sbjct 492791105 GTCGATGGTGTCCGAACTCTCAACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCAC 492791164 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 492791165 AAAGATCTGCAT 492791176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380676433817772