Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14 104 3e-17 seq13 89.7 7e-13 >seq14 Length=755408349 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 35287588 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 35287647 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || |||||||| ||| | |||||||||||| || || Sbjct 35287648 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 35287707 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || |||| || | || ||| || | ||||||||||| Sbjct 35287708 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 35287767 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| | || |||||||| Sbjct 35287768 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 35287809 >seq13 Length=727576108 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 79584464 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 79584523 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| || || ||| || || ||| | |||||||| ||| || || Sbjct 79584524 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 79584583 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 79584584 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 79584643 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || |||||||| ||||| | || |||||||| Sbjct 79584644 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 79584685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669888079081840