Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13 161 1e-34 seq14 154 2e-32 >seq13 Length=727576108 Score = 161 bits (178), Expect = 1e-34 Identities = 579/892 (65%), Gaps = 40/892 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| |||||||| Sbjct 164670470 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 164670411 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || || | Sbjct 164670410 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCT-- 164670353 Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 || ||| ||||| | || || || ||| | | |||||||| |||| ||| || | Sbjct 164670352 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACG 164670294 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| || || | | ||| | || || || | | |||| Sbjct 164670293 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 164670235 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 164670234 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 164670175 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| ||||| | |||| || || ||||| ||| || Sbjct 164670174 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 164670119 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| | |||| | | || |||||||| | || Sbjct 164670118 CGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGG 164670059 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||||| | || | | || || |||||| ||| |||||||||||||| | Sbjct 164670058 GGAGCGCTTCG----CGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCT 164670003 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || |||| ||||||| ||||||||||||||||| |||||||| || || || Sbjct 164670002 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACC 164669944 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 164669943 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT- 164669885 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGT 125641 | || | || ||| | | | || ||| || ||| || | || || Sbjct 164669884 CTACGACATCCTCCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCGT 164669834 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 |||| |||||| || || ||||| | ||| | || || | | | Sbjct 164669833 GTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGT 164669774 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 ||||||||| || | || ||| || ||||||| ||||| || || || || || || Sbjct 164669773 CGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT--- 164669717 Query 125762 CGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | | | | ||| |||||| | |||||||||| || || || || | ||| Sbjct 164669716 CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCT 164669657 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 164669656 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 164669605 >seq14 Length=755408349 Score = 154 bits (170), Expect = 2e-32 Identities = 577/891 (65%), Gaps = 38/891 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| |||||||| Sbjct 132513133 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 132513074 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || || | Sbjct 132513073 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCT-- 132513016 Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 || ||| ||||| | || || || ||| | | |||||||| |||| ||| || | Sbjct 132513015 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACG 132512957 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| || || | | ||| | || || || | | |||| Sbjct 132512956 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 132512898 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 132512897 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 132512838 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| ||||| | |||| || || ||||| ||| || Sbjct 132512837 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 132512782 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| | |||| | || |||||||| | | Sbjct 132512781 CGACACCATACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTGCGCTGGATCGACGGTGG 132512722 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||||| |||| | | || || |||||| ||| |||||||||||||| | Sbjct 132512721 GGAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCT 132512666 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || |||| ||||||| ||||||||||||||||| |||||||| || || || Sbjct 132512665 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACC 132512607 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 132512606 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTC 132512547 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 | | || ||||| | | || | | || | | ||| || | || || Sbjct 132512546 T---ACGACATCCTGCG--CGGCAAGCTGGACGAGTCACG----CGTCTTCGAGATCGTC 132512496 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 |||| |||||| || || ||||| | ||| | || || | | | Sbjct 132512495 TCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTC 132512436 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 ||||||||| || | || ||| || ||||||| ||||| || || || || || || | Sbjct 132512435 GGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---C 132512379 Query 125763 GAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | | | ||| |||||| | |||||||||| || || || || | ||| | Sbjct 132512378 ATGGCGCTGGGCTGCAAGAAGCTATACAACGCCACCAACCCGTTCGACTGGATGGAGCTC 132512319 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||||||||| ||||||||| || |||||||| Sbjct 132512318 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 132512268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739677735965840