Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq13 161 1e-34
seq14 154 2e-32
>seq13
Length=727576108
Score = 161 bits (178), Expect = 1e-34
Identities = 579/892 (65%), Gaps = 40/892 (4%)
Strand=Plus/Minus
Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052
|| |||| |||||| ||| | | || ||||| | ||||| ||||| ||||||||
Sbjct 164670470 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 164670411
Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111
| ||||| | ||| ||||| || || ||| ||| | | | ||||| || || |
Sbjct 164670410 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCT-- 164670353
Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169
|| ||| ||||| | || || || ||| | | |||||||| |||| ||| || |
Sbjct 164670352 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACG 164670294
Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228
| ||||| ||| || || | | ||| | || || || | | ||||
Sbjct 164670293 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 164670235
Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288
| ||| ||||| ||||| ||| || |||||| | ||||| || ||||||||
Sbjct 164670234 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 164670175
Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344
|| || || | ||||| ||||| | |||| || || ||||| ||| ||
Sbjct 164670174 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 164670119
Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404
|||||| | || | | || ||||| | |||| | | || |||||||| | ||
Sbjct 164670118 CGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGG 164670059
Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463
|| ||||| | || | | || || |||||| ||| |||||||||||||| |
Sbjct 164670058 GGAGCGCTTCG----CGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCT 164670003
Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522
|||| | || |||| ||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 164670002 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACC 164669944
Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582
| |||||| | || || || ||||||||||| ||||| ||||| ||| || ||
Sbjct 164669943 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT- 164669885
Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGT 125641
| || | || ||| | | | || ||| || ||| || | || ||
Sbjct 164669884 CTACGACATCCTCCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCGT 164669834
Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701
|||| |||||| || || ||||| | ||| | || || | | |
Sbjct 164669833 GTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGT 164669774
Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761
||||||||| || | || ||| || ||||||| ||||| || || || || || ||
Sbjct 164669773 CGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT--- 164669717
Query 125762 CGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818
| | | | ||| |||||| | |||||||||| || || || || | |||
Sbjct 164669716 CATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCT 164669657
Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
||| || || |||| ||||||||||| ||||||||| ||| ||||||||
Sbjct 164669656 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 164669605
>seq14
Length=755408349
Score = 154 bits (170), Expect = 2e-32
Identities = 577/891 (65%), Gaps = 38/891 (4%)
Strand=Plus/Minus
Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052
|| |||| |||||| ||| | | || ||||| | ||||| ||||| ||||||||
Sbjct 132513133 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 132513074
Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111
| ||||| | ||| ||||| || || ||| ||| | | | ||||| || || |
Sbjct 132513073 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCT-- 132513016
Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169
|| ||| ||||| | || || || ||| | | |||||||| |||| ||| || |
Sbjct 132513015 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACG 132512957
Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228
| ||||| ||| || || | | ||| | || || || | | ||||
Sbjct 132512956 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 132512898
Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288
| ||| ||||| ||||| ||| || |||||| | ||||| || ||||||||
Sbjct 132512897 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 132512838
Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344
|| || || | ||||| ||||| | |||| || || ||||| ||| ||
Sbjct 132512837 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 132512782
Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404
|||||| | || | | || ||||| | |||| | || |||||||| | |
Sbjct 132512781 CGACACCATACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTGCGCTGGATCGACGGTGG 132512722
Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463
|| ||||| |||| | | || || |||||| ||| |||||||||||||| |
Sbjct 132512721 GGAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCT 132512666
Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522
|||| | || |||| ||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 132512665 CGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACC 132512607
Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582
| |||||| | || || || ||||||||||| ||||| ||||| ||| || ||
Sbjct 132512606 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTC 132512547
Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642
| | || ||||| | | || | | || | | ||| || | || ||
Sbjct 132512546 T---ACGACATCCTGCG--CGGCAAGCTGGACGAGTCACG----CGTCTTCGAGATCGTC 132512496
Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702
|||| |||||| || || ||||| | ||| | || || | | |
Sbjct 132512495 TCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTC 132512436
Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762
||||||||| || | || ||| || ||||||| ||||| || || || || || || |
Sbjct 132512435 GGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---C 132512379
Query 125763 GAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819
| | | ||| |||||| | |||||||||| || || || || | ||| |
Sbjct 132512378 ATGGCGCTGGGCTGCAAGAAGCTATACAACGCCACCAACCCGTTCGACTGGATGGAGCTC 132512319
Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| || || |||| ||||||||||| ||||||||| || ||||||||
Sbjct 132512318 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 132512268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739677735965840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |