Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 6e-11 >seq12 Length=703217322 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| | || ||||| || || ||||| ||||||||||| || Sbjct 511296943 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGC- 511297001 Query 15196 TAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 ||| ||| | || |||| || |||||||| |||| | | |||||||| Sbjct 511297002 --CAATGTTCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGA 511297059 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||| || || ||||| ||| ||| || ||| | || |||||||| | | || Sbjct 511297060 GGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCG 511297119 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || || || || ||||| || || || ||||| || ||||| Sbjct 511297120 ACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 511297169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361520913725094