Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq14 100 2e-16
seq13 95.1 1e-14
seq12 86.0 5e-12
>seq14
Length=755408349
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| |||||||| |||| ||| | |||||
Sbjct 638038144 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGTGTGCGACCATCCTC 638038085
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | || || | |||||| ||| ||| | |||||| |||||
Sbjct 638038084 AAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 638038025
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | ||| || || || ||| || | ||| ||||| ||
Sbjct 638038024 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 638037965
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || |||||||| || |||||
Sbjct 638037964 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 638037935
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| |||||||||||||||||||||||||| |||| || | |||||
Sbjct 643860047 CACCAGGTGCAGAGTAGACTCCTTTTGAATATTGTAATCAGCCAAAGTGCGACCATCCTC 643860106
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| || | || || | |||||| ||| ||| | ||||| |||||
Sbjct 643860107 GAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 643860166
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || |||| ||| | ||| || || ||
Sbjct 643860167 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGACTCCACTTCCAAGGTGATAGTCTT 643860226
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || ||||||||||| |||||
Sbjct 643860227 GCCAGTAAGGGTCTTGACAAAAATCTGCAT 643860256
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| ||||||||||| | || | |||||
Sbjct 639897723 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGACCATCCTC 639897782
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || || | |||||| ||| ||| | |||||| |||||
Sbjct 639897783 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 639897842
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || ||| || | ||| ||||| ||
Sbjct 639897843 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 639897902
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || || ||||| ||||||||
Sbjct 639897903 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 639897932
>seq13
Length=727576108
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| ||||||||||||| || | |||||
Sbjct 657438535 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCATCCTC 657438476
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | || || | |||||| ||| ||| | |||||| |||||
Sbjct 657438475 GAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 657438416
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | ||| || || || ||| || | ||| ||||| ||
Sbjct 657438415 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 657438356
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
| || || || |||||||| || |||||
Sbjct 657438355 GCTAGTCAAGGTCTTGACAAAGATCTGCAT 657438326
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| ||||||||||| | || | |||||
Sbjct 658874564 CACCAAGTGTACAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658874623
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || || | |||||| ||| ||| | ||||||||||||
Sbjct 658874624 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTG 658874683
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || ||| || | ||| ||||| ||
Sbjct 658874684 GATCTTCGCCTTCACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 658874743
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || ||||| || || |||||
Sbjct 658874744 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 658874773
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| ||||||||||| | || | |||||
Sbjct 658880805 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658880864
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || || | |||||| ||| ||| | ||||||||||||
Sbjct 658880865 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTG 658880924
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | | || || || ||| || | ||| ||||| ||
Sbjct 658880925 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 658880984
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || ||||| || || |||||
Sbjct 658880985 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 658881014
>seq12
Length=703217322
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|||||||||||||| || |||||||| |||| |||| | | ||||| ||||| || ||
Sbjct 511296973 GTAGACTCCTTTTGGATGTTGTAATCAGCCAATGTTCGGCCATCCTCTAGCTGCTTGCCA 511297032
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || || ||||| || ||| || | |||||| ||||| ||| || |||
Sbjct 511297033 GCAAATATGAGCCTCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 511297092
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||||| | ||| || | || || || || ||||| | ||
Sbjct 511297093 ACATTGTCAATGGTATCTGAACTCTCGACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTC 511297152
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||| || |||||
Sbjct 511297153 TTGACAAAGATCTGCAT 511297169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413819284656796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |