Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14 100 2e-16 seq13 95.1 1e-14 seq12 86.0 5e-12 >seq14 Length=755408349 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| |||||||| |||| ||| | ||||| Sbjct 638038144 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGTGTGCGACCATCCTC 638038085 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 638038084 AAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 638038025 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| || | ||| ||||| || Sbjct 638038024 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 638037965 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 638037964 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 638037935 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||||||||||||||||| |||| || | ||||| Sbjct 643860047 CACCAGGTGCAGAGTAGACTCCTTTTGAATATTGTAATCAGCCAAAGTGCGACCATCCTC 643860106 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 643860107 GAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 643860166 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || |||| ||| | ||| || || || Sbjct 643860167 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGACTCCACTTCCAAGGTGATAGTCTT 643860226 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||||||||| ||||| Sbjct 643860227 GCCAGTAAGGGTCTTGACAAAAATCTGCAT 643860256 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 639897723 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGACCATCCTC 639897782 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 639897783 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 639897842 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 639897843 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 639897902 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 639897903 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 639897932 >seq13 Length=727576108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||||| || | ||||| Sbjct 657438535 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCATCCTC 657438476 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 657438475 GAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 657438416 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| || | ||| ||||| || Sbjct 657438415 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 657438356 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || || |||||||| || ||||| Sbjct 657438355 GCTAGTCAAGGTCTTGACAAAGATCTGCAT 657438326 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 658874564 CACCAAGTGTACAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658874623 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| ||| | |||||||||||| Sbjct 658874624 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTG 658874683 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 658874684 GATCTTCGCCTTCACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 658874743 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 658874744 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 658874773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 658880805 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658880864 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| ||| | |||||||||||| Sbjct 658880865 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTG 658880924 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | || || || ||| || | ||| ||||| || Sbjct 658880925 GATCTTCGCCTTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTT 658880984 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 658880985 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 658881014 >seq12 Length=703217322 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || |||||||| |||| |||| | | ||||| ||||| || || Sbjct 511296973 GTAGACTCCTTTTGGATGTTGTAATCAGCCAATGTTCGGCCATCCTCTAGCTGCTTGCCA 511297032 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || ||||| || ||| || | |||||| ||||| ||| || ||| Sbjct 511297033 GCAAATATGAGCCTCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 511297092 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || || || || ||||| | || Sbjct 511297093 ACATTGTCAATGGTATCTGAACTCTCGACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTC 511297152 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 511297153 TTGACAAAGATCTGCAT 511297169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413819284656796