Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq129631 113 7e-20 >seq129631 Length=630463 Score = 113 bits (124), Expect = 7e-20 Identities = 283/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 147119 CTTTTATAACGCTGTTTCAACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGT 147178 ||||||||| || |||| ||| ||| | || ||||| |||||||||||| |||| || Sbjct 522181 CTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGT 522240 Query 147179 TCGTACCCCGACACGTCAATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCG 147238 | || || || ||||||||||| || |||||| ||| |||| || || | Sbjct 522241 AAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAA 522300 Query 147239 TTCGATCAACAAGGTATCTGAAGCTATCGTTGATTACATTAGTAAACGTGCGGGTATTGG 147298 || || || | || || || || | || || | |||| || || || || Sbjct 522301 CTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGG 522360 Query 147299 CGTAAACGGTGGTGCAATTCGAGCAG-AGG--GTTCGGTTGTACGTGCGGGTGAA--ATT 147353 | | |||| |||| ||||||||| ||| || | | | || | ||| ||| Sbjct 522361 CATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATG---GAGAAGCATT 522417 Query 147354 CGTCACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCT 147413 ||| || || |||||||| | |||||||| || | || || ||||| |||||| Sbjct 522418 --TCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCT 522475 Query 147414 CAAGGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTA 147473 |||||||| || | || || || || ||| | |||||| || ||||| ||||| | Sbjct 522476 CAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATT 522535 Query 147474 GAAAAGCTTCTTGTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTT 147533 ||||| | | ||| | || || || | ||| ||||||| || | | ||||||||| Sbjct 522536 GAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTT 522595 Query 147534 GACTA 147538 || || Sbjct 522596 GATTA 522600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781880515664160