Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq129631 89.7 8e-13 >seq129631 Length=630463 Score = 89.7 bits (98), Expect = 8e-13 Identities = 207/311 (67%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 41033 ATCAAACACAGCAGACGGATCAACATAGAGATTCCGCATGATGTGGGTATAAGAACGGCT 41092 |||||| || |||| |||| | | | ||| | || || || ||||| ||||| Sbjct 524595 ATCAAATACGACAGATGGATGATTAATAATATTTCTAATTATATGTGTATATGAACGTGA 524536 Query 41093 ATGAATTGTCTCACTGAAACTCCATGTGGTGATCCAAGTTTCAAGCGCGACATCAGATAC 41152 |||||||||||| ||| |||||| ||||| ||||| | || | ||| || Sbjct 524535 ATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCATGTTTCTAATTCGGGAATAGAAAC 524476 Query 41153 GATTGGCAAGAATACCAAGTTAGGTGCGCGACCTTGTACCGAGTCAAGCAGACTTTGATA 41212 || || || || | | |||||| | ||||| | || ||||| | | ||||||| Sbjct 524475 TATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGAATAGAATCAAGTAAAGTTTGATA 524416 Query 41213 TTTCAAGTTTTGAGTGAAAACATGTTGTTCGGCTTCACTCAGTTGATTAT---AGTCGAT 41269 ||| || || | |||| ||||| |||| | | || ||| | | || || Sbjct 524415 TTTTAAATTACTTATAAAAATATGTTTTTCG---TTAGAAGGTAAATTTTGAAAATCTAT 524359 Query 41270 TGCATCCTTAGACAAATCCACTTCTTCGGGACGCCAGAAAAATGAAAGTTGCTTTTCTGT 41329 | ||| ||||| ||||| | |||||| || | ||| |||||||||||||| ||||| | Sbjct 524358 TCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAAAAAATGAAAGTTGTTTTTCAAT 524299 Query 41330 AAGCTTATCAA 41340 || || |||| Sbjct 524298 TAGTTTTTCAA 524288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744829713840160