Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq105714 134 1e-26 seq84194 125 6e-24 seq8 120 3e-22 seq7 105 6e-18 seq13633 87.8 2e-12 seq1 86.0 5e-12 >seq105714 Length=389783 Score = 134 bits (148), Expect = 1e-26 Identities = 180/247 (73%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 84922 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 84863 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 84862 GCGACGTCCGG---CGTGGCGATCCTCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 84806 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| || |||| |||||| ||||| ||||| ||| ||| |||| Sbjct 84805 TTGACGGCGAAGTCGGCGT--CCGAGTGGTTGAAGAGCACGACGCCGACGGGGCCCCGGT 84748 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 84747 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 84688 Query 5736 GGGGAGC 5742 | || || Sbjct 84687 GCGGCGC 84681 >seq84194 Length=228926 Score = 125 bits (138), Expect = 6e-24 Identities = 178/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| |||| || | || |||| ||| ||||||| Sbjct 131263 ACGCCGGTGGATCCGAACCCGCCCTCGCCCCTGACGGTGGCGTCGAGGTCGTCCACCTCG 131322 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 131323 GCGACGTCCGG---CGTGGCGATCCTCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 131379 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| || |||| |||||| || || ||||| ||| ||| |||| Sbjct 131380 TTCACGGCGAAGTCGGCGT--CCGAGTGGTTGAAGAGGACGACGCCGACGGGGCCCCGGT 131437 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 131438 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 131497 Query 5736 GGGGAGC 5742 | || || Sbjct 131498 GCGGCGC 131504 >seq8 Length=673896466 Score = 120 bits (132), Expect = 3e-22 Identities = 171/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| || || | || | || |||| ||| | ||||||| Sbjct 13178218 ACGCCGGTGGACCCGAACCCTCCCTCCCCGCGGAGGGTGGCGTCGAGGTCCTCCACCTCG 13178159 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | || | ||||| |||||| | |||||||| | ||| Sbjct 13178158 GCGACCTCCGGCGTCGCGATCAC-CTGGATGATCATCTGCGCGACGCGGTCGCCGGGCTT 13178100 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || | || || | |||| |||||| ||||| ||||||||| |||||||||| Sbjct 13178099 CACGGCAAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGACGCCCACGGGGCCGCGGTAG 13178042 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || ||||||||||||||| |||||| | ||||||||| || Sbjct 13178041 TCGGCGTCGATCACCCCGGCGCCCACGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 13177986 >seq7 Length=726427787 Score = 105 bits (116), Expect = 6e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTG 5647 ||||| |||||| | ||||| || | ||| || | || || | |||| |||| Sbjct 588373286 GATCATCTGCGCGACGCGGTCACCGGGCTTCACGGCAAAGTCCACCT--CCGAGTGGTTG 588373229 Query 5648 AACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCG 5707 || ||||| || |||||| |||||||||||| ||||| ||||| || |||||||||||| Sbjct 588373228 AAGAGCACGACACCCACGGGGCCGCGGTAGTCAGCGTCGATCACCCCGGCGCCCACGTCG 588373169 Query 5708 ATGAAGTGCTTGACCGCCAGGCCGGA 5733 ||| ||||||| | ||||||||| || Sbjct 588373168 ATGGAGTGCTTCAGCGCCAGGCCCGA 588373143 >seq13633 Length=125509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAA 5649 || ||||||||| | | ||| | | ||| || |||| ||| | | | |||||| Sbjct 107197 GACCAGCTGCGCCACGCAGTCCCTGGGCTTCACGGCGAAGTCGACGCCGGAGTGGTTGAA 107256 Query 5650 CAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGAT 5709 || | ||||| ||| |||| |||||||||||||| | ||||||||||||||||||||| Sbjct 107257 GAGGATGACGCCGACGGTGCCCCGGTAGTCGGCGTCCACCACGCCCGCGCCCACGTCGAT 107316 Query 5710 GAAGTGCTTGACCGCCAG 5727 ||| ||| |||||| Sbjct 107317 AGAGTACTTCCACGCCAG 107334 >seq1 Length=593586810 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 5490 GCTCGGTG--CGCACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAG 5547 |||||| | | |||||| |||||||||||||| || | || | | ||| |||| || Sbjct 560251122 GCTCGGAGTTCACACGCCGGTGGACCCGAATCCTCCCTCCCCCCGGACGGTAGCGTCGAG 560251181 Query 5548 GCACGCCACCTCTTCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTC 5606 | | ||||||| | || | || ||| | | | || | ||||| ||| || || Sbjct 560251182 GTCCTCCACCTCGGCGACCTTCGGCGTCGCGATCAC-CTGGAGGATCATCTGTGCGATGT 560251240 Query 5607 GGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCAC 5664 || |||| | ||| || |||| || | |||| |||||| ||||| | |||||| Sbjct 560251241 GGCCGCCGGGCTTCACGGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGAGGCCCAC 560251298 Query 5665 GTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTG 5715 |||||||||||| ||||| ||||| || ||||||| |||| ||||| Sbjct 560251299 CGGGCCGCGGTAGTCCGCGTCGATCACCCCTGCGCCCATGTCGGGAAAGTG 560251349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429272745755408