Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq129631 367 8e-97 >seq129631 Length=630463 Score = 367 bits (406), Expect = 8e-97 Identities = 866/1302 (67%), Gaps = 18/1302 (1%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 ||||||||| | ||||| ||||| |||||| | |||||| | |||||| ||| || Sbjct 139547 GCAGAACAATCAGTACTAGGTGGATTAATGTTAGATAACGAACAGTGGGATTCTGTTTCA 139488 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAAT-TTTCAGTGAGAT 71455 || | | | || ||||||||||||| || || | ||||| ||| ||||| || || Sbjct 139487 GAACATGTGGTGGCTGATGATTTTTTTAGCAAACCCCATCGCTTAATATTTCAA-GAAAT 139429 Query 71456 GGAGAGGTTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515 | | || |||| | || | || |||||||| || ||| | | ||| | | || Sbjct 139428 GCAACAATTGTTAAATTTAGGACATCCTATTGATTTAATTACATTATCAGAATCTTTAGA 139369 Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575 ||| || || ||||||||| | | ||| | ||| | || | || || | || || || Sbjct 139368 ACAAAAAGGAAAATTAGAAAGTGTAGGTAGATTTTCTTATTTAGCTGAATTATCGAAAAA 139309 Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635 || || || | || |||||| ||| ||||| || || | || ||| | || | || Sbjct 139308 TACTCCTAGTACAGCGAATATTACTGCATATGCTGACATAATACGAGAAAGAGCAATAGT 139249 Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCA-GGATG 71691 | |||||||| | || || ||| ||||||| | || ||||||| | || ||| | Sbjct 139248 AAGAGAAATGATATTAGTAGCTAATAAAATAGCAAACGCAGGATATGATACTCAAGGACG 139189 Query 71692 GCAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAA 71751 | ||| | ||||| | ||| || || | |||||| | || ||||||| Sbjct 139188 TAAA----AGCGAAGAATTATTAGATTACGCGGAATCTAGTGTTTTTAAGATTGCTGAAA 139133 Query 71752 AACG----ACAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACG 71807 |||| | |||||| | ||||||||| |||| | ||||| |||| ||| Sbjct 139132 AACGTTTTAAAAAAGA----TTCAGGTCCAAAAAATATTGAACAAATTCTTGATGAAACT 139077 Query 71808 GTATCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACG 71867 || || | || ||| |||| ||| || |||| || ||||| || | |||| Sbjct 139076 GTTACTAGTATTGAAAAGTTATTTTTATCTCCTAATGACGGAGTAACAGGAATAAATACA 139017 Query 71868 GGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTC 71927 |||| | ||| | ||||| || || |||| | || || || || || || || | Sbjct 139016 GGATATCAAGATTTAAATAAAAAAACATCAGGTTTACAACCTTCAGAACTTATTATCATT 138957 Query 71928 GCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCA 71987 || || | || || ||||| || || || ||||| ||||| | |||||||| || Sbjct 138956 GCAGCAAGACCTTCAATGGGTAAAACAACTTTTGCCATGAACTTATGTGAAAATGCTGCT 138897 Query 71988 GTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATG 72047 | | | ||||| || || ||| ||||||| | |||||||| | | || | ||| Sbjct 138896 ATGCTATATGATAAACCAGTGTTGATTTTTAGTTTAGAGATGCCTGGAGAGCAAATTATG 138837 Query 72048 ATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTT 72107 ||||| || || ||| | | | || ||||| | |||||||| || || ||| | Sbjct 138836 ATGCGTATGCTAGCATCTTTATCTAGAGTAAATCAGGCACGTATTCGAACTGGACAATTA 138777 Query 72108 AACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAAT 72167 || || || || ||| | || | ||||| |||| | || | | | || |||| Sbjct 138776 AATGATGAAGACTGGTCTCGTATGTCTGGTACAATTAATGTTTTACTTAAAAAAAAGAAC 138717 Query 72168 ATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGT 72227 |||| ||| ||||| || || || || || | || | ||||| | || |||||| Sbjct 138716 ATTTATATAGATGATTCTTCAGCTCTTACTCCCAGTGAAGTTCGTTCTAGAGCACGTCGT 138657 Query 72228 GTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGC 72287 ||||| |||||| ||| || | | || ||| | || || | ||| | ||| | Sbjct 138656 ATTTATCGTGAAAATAATGGATTAACTTTAATAATGGTTGATTATTTACAATTAATGAGA 138597 Query 72288 GTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAG 72347 || || || || |||||||| || |||||||| || |||||| | | | || Sbjct 138596 GTTCCATCTCTTTCTGACAACCGAACTCTTGAAATTGCTGAAATTTCTAGAACCTTAAAA 138537 Query 72348 GCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTT 72407 || |||| ||||||||||||||||| || | ||||| |||||| | || || || || Sbjct 138536 GCACTGGCAAAGGAATTACAAGTACCAGTTATAGCATTATCACAATTAAACCGTTCTCTA 138477 Query 72408 GAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAG 72467 ||||| | | || ||| |||| ||||||||||||||||| || || || | | || Sbjct 138476 GAACAAAGATCAGATAAAAGACCAGTAAATTCAGATTTACGCGAGTCTGGTTCTTTAGAA 138417 Query 72468 CAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAA 72527 || |||||||| | || |||||| | ||||| |||||| | |||||| |||| || Sbjct 138416 CAAGACGCAGATTTAATAATGTTTATATATCGTGACGAAATATATCACGAAAATAGTGAT 138357 Query 72528 ATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTG 72587 | || || ||||| || | || || ||||| ||| ||||||| |||||||| || | Sbjct 138356 TTTAAAGGTATTGCTGAAATTATAATAGGAAAACAAAGAAATGGACCAATTGGAACAATA 138297 Query 72588 AGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTAT 72629 | || | || ||||| || | || | |||||||| ||| Sbjct 138296 TGCTTAACATTCAACGGACATTGGTCTAGATTTGATAATTAT 138255 Score = 131 bits (144), Expect = 1e-25 Identities = 230/335 (69%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 |||||||| ||||| ||| | |||||| | | || ||||| || || | | ||||| Sbjct 140664 GGTGTAAATAAAGTAATCTTAATTGGTCACTTAGGCCAAGATCCTGAAGTTCGTTATATG 140723 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 |||||||| || || | || | | | ||||| || ||| || || Sbjct 140724 CCAAATGGTAATGCAGTAGTAAATATGACACTTGCAACTTCAGAGAACTGGAAAGATAAA 140783 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 | || || || | |||||| ||||||||||||||| | | || || || |||||| | Sbjct 140784 AATACTGGTGAAAATAAAGAGAAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTG 140843 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 ||||||||||| | || ||||| ||||||||||||| || || || ||||| ||| Sbjct 140844 GCTGAAATTGCTGGAGAATATTTGAGAAAAGGTTCTCAAGTATATATTGAAGGATCCCTT 140903 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 |||| | || ||| ||| | ||| | |||||||| || || |||||||| || Sbjct 140904 CAAACTAGAAAATGGCAAGACCAAAATGGTCTTGAACGTTATACAACAGAAATTATAGTT 140963 Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCG 21397 | | ||||| || ||||||||| | || |||| Sbjct 140964 AACATTGGCGGTACGATGCAAATGTTAGGAACTCG 140998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||||||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 130148 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 130089 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 130088 CCAGCAAGGGCCA 130076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302684048608014