Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 367 8e-97
>seq129631
Length=630463
Score = 367 bits (406), Expect = 8e-97
Identities = 866/1302 (67%), Gaps = 18/1302 (1%)
Strand=Plus/Minus
Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396
||||||||| | ||||| ||||| |||||| | |||||| | |||||| ||| ||
Sbjct 139547 GCAGAACAATCAGTACTAGGTGGATTAATGTTAGATAACGAACAGTGGGATTCTGTTTCA 139488
Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAAT-TTTCAGTGAGAT 71455
|| | | | || ||||||||||||| || || | ||||| ||| ||||| || ||
Sbjct 139487 GAACATGTGGTGGCTGATGATTTTTTTAGCAAACCCCATCGCTTAATATTTCAA-GAAAT 139429
Query 71456 GGAGAGGTTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515
| | || |||| | || | || |||||||| || ||| | | ||| | | ||
Sbjct 139428 GCAACAATTGTTAAATTTAGGACATCCTATTGATTTAATTACATTATCAGAATCTTTAGA 139369
Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575
||| || || ||||||||| | | ||| | ||| | || | || || | || || ||
Sbjct 139368 ACAAAAAGGAAAATTAGAAAGTGTAGGTAGATTTTCTTATTTAGCTGAATTATCGAAAAA 139309
Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635
|| || || | || |||||| ||| ||||| || || | || ||| | || | ||
Sbjct 139308 TACTCCTAGTACAGCGAATATTACTGCATATGCTGACATAATACGAGAAAGAGCAATAGT 139249
Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCA-GGATG 71691
| |||||||| | || || ||| ||||||| | || ||||||| | || ||| |
Sbjct 139248 AAGAGAAATGATATTAGTAGCTAATAAAATAGCAAACGCAGGATATGATACTCAAGGACG 139189
Query 71692 GCAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAA 71751
| ||| | ||||| | ||| || || | |||||| | || |||||||
Sbjct 139188 TAAA----AGCGAAGAATTATTAGATTACGCGGAATCTAGTGTTTTTAAGATTGCTGAAA 139133
Query 71752 AACG----ACAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACG 71807
|||| | |||||| | ||||||||| |||| | ||||| |||| |||
Sbjct 139132 AACGTTTTAAAAAAGA----TTCAGGTCCAAAAAATATTGAACAAATTCTTGATGAAACT 139077
Query 71808 GTATCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACG 71867
|| || | || ||| |||| ||| || |||| || ||||| || | ||||
Sbjct 139076 GTTACTAGTATTGAAAAGTTATTTTTATCTCCTAATGACGGAGTAACAGGAATAAATACA 139017
Query 71868 GGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTC 71927
|||| | ||| | ||||| || || |||| | || || || || || || || |
Sbjct 139016 GGATATCAAGATTTAAATAAAAAAACATCAGGTTTACAACCTTCAGAACTTATTATCATT 138957
Query 71928 GCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCA 71987
|| || | || || ||||| || || || ||||| ||||| | |||||||| ||
Sbjct 138956 GCAGCAAGACCTTCAATGGGTAAAACAACTTTTGCCATGAACTTATGTGAAAATGCTGCT 138897
Query 71988 GTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATG 72047
| | | ||||| || || ||| ||||||| | |||||||| | | || | |||
Sbjct 138896 ATGCTATATGATAAACCAGTGTTGATTTTTAGTTTAGAGATGCCTGGAGAGCAAATTATG 138837
Query 72048 ATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTT 72107
||||| || || ||| | | | || ||||| | |||||||| || || ||| |
Sbjct 138836 ATGCGTATGCTAGCATCTTTATCTAGAGTAAATCAGGCACGTATTCGAACTGGACAATTA 138777
Query 72108 AACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAAT 72167
|| || || || ||| | || | ||||| |||| | || | | | || ||||
Sbjct 138776 AATGATGAAGACTGGTCTCGTATGTCTGGTACAATTAATGTTTTACTTAAAAAAAAGAAC 138717
Query 72168 ATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGT 72227
|||| ||| ||||| || || || || || | || | ||||| | || ||||||
Sbjct 138716 ATTTATATAGATGATTCTTCAGCTCTTACTCCCAGTGAAGTTCGTTCTAGAGCACGTCGT 138657
Query 72228 GTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGC 72287
||||| |||||| ||| || | | || ||| | || || | ||| | ||| |
Sbjct 138656 ATTTATCGTGAAAATAATGGATTAACTTTAATAATGGTTGATTATTTACAATTAATGAGA 138597
Query 72288 GTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAG 72347
|| || || || |||||||| || |||||||| || |||||| | | | ||
Sbjct 138596 GTTCCATCTCTTTCTGACAACCGAACTCTTGAAATTGCTGAAATTTCTAGAACCTTAAAA 138537
Query 72348 GCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTT 72407
|| |||| ||||||||||||||||| || | ||||| |||||| | || || || ||
Sbjct 138536 GCACTGGCAAAGGAATTACAAGTACCAGTTATAGCATTATCACAATTAAACCGTTCTCTA 138477
Query 72408 GAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAG 72467
||||| | | || ||| |||| ||||||||||||||||| || || || | | ||
Sbjct 138476 GAACAAAGATCAGATAAAAGACCAGTAAATTCAGATTTACGCGAGTCTGGTTCTTTAGAA 138417
Query 72468 CAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAA 72527
|| |||||||| | || |||||| | ||||| |||||| | |||||| |||| ||
Sbjct 138416 CAAGACGCAGATTTAATAATGTTTATATATCGTGACGAAATATATCACGAAAATAGTGAT 138357
Query 72528 ATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTG 72587
| || || ||||| || | || || ||||| ||| ||||||| |||||||| || |
Sbjct 138356 TTTAAAGGTATTGCTGAAATTATAATAGGAAAACAAAGAAATGGACCAATTGGAACAATA 138297
Query 72588 AGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTAT 72629
| || | || ||||| || | || | |||||||| |||
Sbjct 138296 TGCTTAACATTCAACGGACATTGGTCTAGATTTGATAATTAT 138255
Score = 131 bits (144), Expect = 1e-25
Identities = 230/335 (69%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122
|||||||| ||||| ||| | |||||| | | || ||||| || || | | |||||
Sbjct 140664 GGTGTAAATAAAGTAATCTTAATTGGTCACTTAGGCCAAGATCCTGAAGTTCGTTATATG 140723
Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182
|||||||| || || | || | | | ||||| || ||| || ||
Sbjct 140724 CCAAATGGTAATGCAGTAGTAAATATGACACTTGCAACTTCAGAGAACTGGAAAGATAAA 140783
Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242
| || || || | |||||| ||||||||||||||| | | || || || |||||| |
Sbjct 140784 AATACTGGTGAAAATAAAGAGAAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTG 140843
Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302
||||||||||| | || ||||| ||||||||||||| || || || ||||| |||
Sbjct 140844 GCTGAAATTGCTGGAGAATATTTGAGAAAAGGTTCTCAAGTATATATTGAAGGATCCCTT 140903
Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362
|||| | || ||| ||| | ||| | |||||||| || || |||||||| ||
Sbjct 140904 CAAACTAGAAAATGGCAAGACCAAAATGGTCTTGAACGTTATACAACAGAAATTATAGTT 140963
Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCG 21397
| | ||||| || ||||||||| | || ||||
Sbjct 140964 AACATTGGCGGTACGATGCAAATGTTAGGAACTCG 140998
Score = 87.8 bits (96), Expect = 1e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992
||||||||||||||||||| ||||| |||||||||||||||| |||| | ||||||| |
Sbjct 130148 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 130089
Query 70993 CCGGTAGGGGCCA 71005
|| | | ||||||
Sbjct 130088 CCAGCAAGGGCCA 130076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 302684048608014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |