Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq14 91.5 2e-13
seq13 91.5 2e-13
>seq14
Length=755408349
Score = 91.5 bits (100), Expect = 2e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||||||||||| |||||||| | || || |||||||| || |||||
Sbjct 132512554 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 132512613
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || || ||||| || ||||| || |||| ||| || || || ||||||
Sbjct 132512614 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 132512673
Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446
|| || || || ||| || |||||
Sbjct 132512674 ATGCCCTCCAC-GCAGGCGAAGGC 132512696
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| ||
Sbjct 35287588 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 35287647
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || |||||||| ||| | ||||||||||| || ||
Sbjct 35287648 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 35287707
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| ||||| || || |||| || | || ||| || | || ||||||||
Sbjct 35287708 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 35287767
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||| ||||| ||||| | || ||||||||
Sbjct 35287768 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 35287809
>seq13
Length=727576108
Score = 91.5 bits (100), Expect = 2e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||||||||||| |||||||| | || || |||||||| || |||||
Sbjct 164669891 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 164669950
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || || ||||| || ||||| || |||| ||| || || || ||||||
Sbjct 164669951 CCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 164670010
Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446
|| || || || ||| || |||||
Sbjct 164670011 ATGCCCTCGAC-GCAGGCGAAGGC 164670033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621785917403440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |