Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 9e-16 seq11 91.5 1e-13 seq14 87.8 2e-12 >seq12 Length=703217322 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | ||||| | || || ||| | | Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| || || || ||||| ||||| Sbjct 511296425 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 511296366 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || ||||| || || |||| | | | | ||||||||| Sbjct 511296365 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 511296306 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || ||||||||||| || ||||| Sbjct 511296305 ATCCAAAAAGAATCCACTCTTCAT 511296282 >seq11 Length=621432051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || |||||||||||||| | || || | || || ||| | ||||||||| Sbjct 492790484 TTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCCGACACCATT 492790425 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || || ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 492790424 GATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTT 492790365 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||||| || |||| | | | | ||||||||||| |||||| Sbjct 492790364 ATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAAAAA 492790305 Query 24180 GAATCTACAATTCAT 24194 ||||| || ||||| Sbjct 492790304 GAATCCACTCTTCAT 492790290 >seq14 Length=755408349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || ||| |||| || ||| | | Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| ||||| |||||||| ||||| || || || || Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 ||| | |||| | | |||||||||||| || ||| ||| | | | || ||||| | Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTT--GCTGATTACA 638076814 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| ||||||||||| || Sbjct 638076815 ACATCCAAAAAGAATCCAC 638076833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429154560955770