Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq12 98.7 9e-16
seq11 91.5 1e-13
seq14 87.8 2e-12
>seq12
Length=703217322
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || ||||||||||| | ||||| | || || ||| | |
Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || |||||| ||||| || || || ||||| |||||
Sbjct 511296425 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 511296366
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | | || ||||| || || |||| | | | | |||||||||
Sbjct 511296365 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 511296306
Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194
|| ||||||||||| || |||||
Sbjct 511296305 ATCCAAAAAGAATCCACTCTTCAT 511296282
>seq11
Length=621432051
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059
||||| || |||||||||||||| | || || | || || ||| | |||||||||
Sbjct 492790484 TTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCCGACACCATT 492790425
Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119
|| | || || ||||| ||||| || || || ||||| ||||| ||||| ||
Sbjct 492790424 GATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGGCTT 492790365
Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179
|| | | || |||||||| || |||| | | | | ||||||||||| ||||||
Sbjct 492790364 ATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAAAAA 492790305
Query 24180 GAATCTACAATTCAT 24194
||||| || |||||
Sbjct 492790304 GAATCCACTCTTCAT 492790290
>seq14
Length=755408349
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | || || || | || ||| |||| || ||| | |
Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | |||||| ||||| |||||||| ||||| || || || ||
Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168
||| | |||| | | |||||||||||| || ||| ||| | | | || ||||| |
Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTT--GCTGATTACA 638076814
Query 24169 ACATTCAAAAAGAATCTAC 24187
|||| ||||||||||| ||
Sbjct 638076815 ACATCCAAAAAGAATCCAC 638076833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429154560955770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |