Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_008515.1
Length=165890
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 163 3e-35
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 163 bits (180), Expect = 3e-35
Identities = 307/450 (68%), Gaps = 6/450 (1%)
Strand=Plus/Minus
Query 138780 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138839
||| || | ||| | ||| ||| ||||||| | |||||| | | |||||||| | ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 138840 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138899
| | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || |
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 138900 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138959
||| || || || || | || |||||| || || || ||||| || || | || || ||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446
Query 138960 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139019
||| ||||||||||| || ||||| | |||| || | | || | |||
Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386
Query 139020 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139079
|| ||||| |||| ||||||| || ||||| || |||| ||| | ||||| |||||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 139080 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACA 139136
|| || | ||| ||| ||||| || || |||| | ||||| | |||||
Sbjct 522325 TGCACTAGTTGTAGC---ATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACA 522269
Query 139137 TGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139196
|||||||| || |||||||| || | || | |||||| || || || | || ||
Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATAT 522209
Query 139197 CTGTCGAGTAGATACTGCTTCATAAAAACG 139226
| ||| || | ||| | |||||| ||
Sbjct 522208 TTTAAAAGTGGAAATTGCATTATAAAAGCG 522179
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 68608 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68666
|||| |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||||
Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672
Query 68667 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 68696
| ||||||| ||||| ||| |||||||
Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529730645044000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |