Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq13 398 1e-105
seq14 383 3e-101
seq10 123 5e-23
>seq13
Length=727576108
Score = 398 bits (440), Expect = 1e-105
Identities = 601/844 (71%), Gaps = 23/844 (3%)
Strand=Plus/Minus
Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371
|||||||||||| | |||| |||||||||||||||| | ||||| || ||| ||
Sbjct 164670432 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 164670373
Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428
| |||||| | | || || | |||| ||| || || | || |||
Sbjct 164670372 CGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 164670313
Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488
|||||||||||||| |||||||| || |||||||| ||| ||||||||||| ||
Sbjct 164670312 TTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGAC 164670253
Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548
|||||| | ||||| | |||||||||||||||||| ||||| |||||| | |||
Sbjct 164670252 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 164670193
Query 42549 TCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAAC 42605
|| ||| ||||| || ||||||| | || ||||||| || ||||||| ||
Sbjct 164670192 TCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGAC 164670136
Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665
| || ||| ||||| || || || ||| | | ||||| ||||||||||||
Sbjct 164670135 CGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTC 164670076
Query 42666 AACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724
||||||||| | || ||| |||| ||| | | || ||||| || |||
Sbjct 164670075 CGCTGGATCGACGGCGGGGAGCGC----TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGT 164670020
Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC 42784
|||||||||||||||||||||| ||||| | ||||||||||||||||| || | |
Sbjct 164670019 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCT 164669960
Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844
||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | ||
Sbjct 164669959 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 164669900
Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTC 42902
||| ||||||||||| | ||| | |||| | |||| || || || || |||
Sbjct 164669899 CTTCGCCTGCCTCCTCT--ACGA-CATCCTCCGCGGCAAG--CTGGACGAGTCCCGCGTC 164669845
Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962
| ||| | | ||||||||||| ||||||| ||||||| || | |||| |||
Sbjct 164669844 TTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCC 164669785
Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022
| || |||||||||||| |||||||||| || |||||||| ||| ||||||||||
Sbjct 164669784 TGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 164669725
Query 43023 CATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081
| || || || | | |||| || || |||||| | | ||| |||||||
Sbjct 164669724 CGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTG 164669666
Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141
|||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| ||
Sbjct 164669665 GATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 164669606
Query 43142 CCAG 43145
||||
Sbjct 164669605 CCAG 164669602
>seq14
Length=755408349
Score = 383 bits (424), Expect = 3e-101
Identities = 600/845 (71%), Gaps = 25/845 (3%)
Strand=Plus/Minus
Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371
|||||||||||| | |||| |||||||||||||||| | ||||| || ||| ||
Sbjct 132513095 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 132513036
Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427
| |||||| | || ||| ||||| || ||| || || | || ||
Sbjct 132513035 CGCCACTGGGACACCACGCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 132512977
Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487
||||||||||||||| |||||||| || |||||||| ||| ||||||||||| ||
Sbjct 132512976 CTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 132512917
Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547
|||||| | ||||| | |||||||||||||||||| ||||| |||||| | ||
Sbjct 132512916 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 132512857
Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604
||| ||| ||||| || ||||||| | || ||||||| || ||||||| |
Sbjct 132512856 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 132512800
Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664
| | || ||| ||||| || || || ||| | | ||||| |||||||| ||
Sbjct 132512799 CCGCCTCTTCCGCGCCATCGACACCATACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCT 132512740
Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723
||||||||| || || ||| |||| |||| | | || ||||| || ||
Sbjct 132512739 GCGCTGGATCGACGGTGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 132512684
Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783
| ||||||||||||||||||||| ||||| | ||||||||||||||||| || | |
Sbjct 132512683 TGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGC 132512624
Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843
||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | |
Sbjct 132512623 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 132512564
Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901
|||| ||||||||||| | ||| | ||| | |||| || || || || ||
Sbjct 132512563 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCACGCGT 132512509
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961
| | ||| || | ||||||||||| ||||||| ||||||| || | |||||||
Sbjct 132512508 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCC 132512449
Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021
| | || |||||||||||| |||||| ||| || |||||||| ||| |||||||||
Sbjct 132512448 CTGCGCGCTCGTCGGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTTCGTCGCCGA 132512389
Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080
|| || || || | | |||| || || |||||| | | ||| |||||||
Sbjct 132512388 CCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTATACAACGCCACCAACCCGTTCGACT 132512330
Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140
|||||| |||||| || |||||||||||||||| |||||||||||||| | ||| |
Sbjct 132512329 GGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGT 132512270
Query 43141 ACCAG 43145
|||||
Sbjct 132512269 ACCAG 132512265
>seq10
Length=712180895
Score = 123 bits (136), Expect = 5e-23
Identities = 253/366 (69%), Gaps = 14/366 (4%)
Strand=Plus/Plus
Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844
|| ||| || |||||||||| ||| | |||||| | | |||||||| || || | ||
Sbjct 262131361 GAGGCCGGGCGTCACCTTCTCCAACTAGCTCATCTCCCGAGACGAGGGTCTACACTGCGA 262131420
Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA-AGGAGC---GGG 42900
||| || |||||||| | || | ||||| | ||||| |||| | | | |
Sbjct 262131421 CTTCGCATGCCTCCTCTAT--GA-CAACCTCTGCGGCAAGC--TCGACAAGTCCTATGTT 262131475
Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960
| | | ||| | | ||||||||||| ||||||| |||||| || | |||| |
Sbjct 262131476 TTCAAG--ATCGTGTCCGAGGCCGTGGATATCGAGAGGGAGTTTGTCTGTGATGCGCTCC 262131533
Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020
|| | || |||||||||||| ||||||||||| || |||||||| ||| ||| ||||
Sbjct 262131534 CCTGCGCGCTCGTCGGCATGAACGACGACCTCATGAGCCAGTACATCGAGTTCGTTGCCG 262131593
Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079
|| || || || | | |||| || || ||||| | | ||| ||| ||
Sbjct 262131594 ACAGCCTGCTCATGGC-GTTGGGATGCAAGAAGCTGTACAATGCCACCAACCCATTCAAC 262131652
Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139
| |||||| |||| | || |||||||||||||| | ||||||||||||||| |||
Sbjct 262131653 TGGATGGAGCTCATC-CCCTGCAGGGCAAGACCAACATATTCGAGAAGCGCGTCAGCGAG 262131711
Query 43140 TACCAG 43145
|| |||
Sbjct 262131712 TAGCAG 262131717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 942578786471840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |