Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 398 1e-105 seq14 383 3e-101 seq10 123 5e-23 >seq13 Length=727576108 Score = 398 bits (440), Expect = 1e-105 Identities = 601/844 (71%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||||||||||||| | ||||| || ||| || Sbjct 164670432 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 164670373 Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | | || || | |||| ||| || || | || ||| Sbjct 164670372 CGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 164670313 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 164670312 TTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGAC 164670253 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | ||| Sbjct 164670252 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 164670193 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || ||| ||||| || ||||||| | || ||||||| || ||||||| || Sbjct 164670192 TCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGAC 164670136 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 | || ||| ||||| || || || ||| | | ||||| |||||||||||| Sbjct 164670135 CGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTC 164670076 Query 42666 AACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||||||||| | || ||| |||| ||| | | || ||||| || ||| Sbjct 164670075 CGCTGGATCGACGGCGGGGAGCGC----TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGT 164670020 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC 42784 |||||||||||||||||||||| ||||| | ||||||||||||||||| || | | Sbjct 164670019 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCT 164669960 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | || Sbjct 164669959 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 164669900 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTC 42902 ||| ||||||||||| | ||| | |||| | |||| || || || || ||| Sbjct 164669899 CTTCGCCTGCCTCCTCT--ACGA-CATCCTCCGCGGCAAG--CTGGACGAGTCCCGCGTC 164669845 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | ||| | | ||||||||||| ||||||| ||||||| || | |||| ||| Sbjct 164669844 TTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCC 164669785 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 | || |||||||||||| |||||||||| || |||||||| ||| |||||||||| Sbjct 164669784 TGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 164669725 Query 43023 CATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | || || || | | |||| || || |||||| | | ||| ||||||| Sbjct 164669724 CGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTG 164669666 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| || Sbjct 164669665 GATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 164669606 Query 43142 CCAG 43145 |||| Sbjct 164669605 CCAG 164669602 >seq14 Length=755408349 Score = 383 bits (424), Expect = 3e-101 Identities = 600/845 (71%), Gaps = 25/845 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||||||||||||| | ||||| || ||| || Sbjct 132513095 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 132513036 Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427 | |||||| | || ||| ||||| || ||| || || | || || Sbjct 132513035 CGCCACTGGGACACCACGCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 132512977 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 132512976 CTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 132512917 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | || Sbjct 132512916 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 132512857 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||| ||||| || ||||||| | || ||||||| || ||||||| | Sbjct 132512856 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 132512800 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | || ||| ||||| || || || ||| | | ||||| |||||||| || Sbjct 132512799 CCGCCTCTTCCGCGCCATCGACACCATACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCT 132512740 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 ||||||||| || || ||| |||| |||| | | || ||||| || || Sbjct 132512739 GCGCTGGATCGACGGTGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 132512684 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 | ||||||||||||||||||||| ||||| | ||||||||||||||||| || | | Sbjct 132512683 TGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGC 132512624 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | | Sbjct 132512623 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 132512564 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | ||| | |||| || || || || || Sbjct 132512563 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCACGCGT 132512509 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | ||| || | ||||||||||| ||||||| ||||||| || | ||||||| Sbjct 132512508 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTGCC 132512449 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | | || |||||||||||| |||||| ||| || |||||||| ||| ||||||||| Sbjct 132512448 CTGCGCGCTCGTCGGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTTCGTCGCCGA 132512389 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || || || | | |||| || || |||||| | | ||| ||||||| Sbjct 132512388 CCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTATACAACGCCACCAACCCGTTCGACT 132512330 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| |||||| || |||||||||||||||| |||||||||||||| | ||| | Sbjct 132512329 GGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGT 132512270 Query 43141 ACCAG 43145 ||||| Sbjct 132512269 ACCAG 132512265 >seq10 Length=712180895 Score = 123 bits (136), Expect = 5e-23 Identities = 253/366 (69%), Gaps = 14/366 (4%) Strand=Plus/Plus Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 || ||| || |||||||||| ||| | |||||| | | |||||||| || || | || Sbjct 262131361 GAGGCCGGGCGTCACCTTCTCCAACTAGCTCATCTCCCGAGACGAGGGTCTACACTGCGA 262131420 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA-AGGAGC---GGG 42900 ||| || |||||||| | || | ||||| | ||||| |||| | | | | Sbjct 262131421 CTTCGCATGCCTCCTCTAT--GA-CAACCTCTGCGGCAAGC--TCGACAAGTCCTATGTT 262131475 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | | ||| | | ||||||||||| ||||||| |||||| || | |||| | Sbjct 262131476 TTCAAG--ATCGTGTCCGAGGCCGTGGATATCGAGAGGGAGTTTGTCTGTGATGCGCTCC 262131533 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | || |||||||||||| ||||||||||| || |||||||| ||| ||| |||| Sbjct 262131534 CCTGCGCGCTCGTCGGCATGAACGACGACCTCATGAGCCAGTACATCGAGTTCGTTGCCG 262131593 Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 || || || || | | |||| || || ||||| | | ||| ||| || Sbjct 262131594 ACAGCCTGCTCATGGC-GTTGGGATGCAAGAAGCTGTACAATGCCACCAACCCATTCAAC 262131652 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 | |||||| |||| | || |||||||||||||| | ||||||||||||||| ||| Sbjct 262131653 TGGATGGAGCTCATC-CCCTGCAGGGCAAGACCAACATATTCGAGAAGCGCGTCAGCGAG 262131711 Query 43140 TACCAG 43145 || ||| Sbjct 262131712 TAGCAG 262131717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942578786471840