Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq13 167 5e-36
seq14 154 3e-32
seq9 107 4e-18
seq10 100 6e-16
>seq13
Length=727576108
Score = 167 bits (184), Expect = 5e-36
Identities = 310/452 (69%), Gaps = 6/452 (1%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| ||||||||| | ||||| || || || | || || || |||
Sbjct 164670051 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 164669992
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 164669991 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 164669932
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||| |||||||||||||| ||| | |||| || | || | |||
Sbjct 164669931 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTC 164669872
Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525
| |||||| || | || || ||| | ||| | | || || || || | |
Sbjct 164669871 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATC 164669815
Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585
|| | ||| ||| | |||||||| | || ||| ||| | ||||||||| || |||
Sbjct 164669814 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 164669755
Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645
||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | ||||
Sbjct 164669754 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 164669695
Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705
|||||||| ||| ||||| || | || ||||||||||| ||||| || || || ||
Sbjct 164669694 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 164669635
Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||||||||||| ||||| ||| | || || ||
Sbjct 164669634 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 164669603
>seq14
Length=755408349
Score = 154 bits (170), Expect = 3e-32
Identities = 300/440 (68%), Gaps = 6/440 (1%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| ||||||||| | ||||| || || || | || || || |||
Sbjct 132512714 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTTC 132512655
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 132512654 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 132512595
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||| |||||||||||||| ||| | |||| || | || | ||
Sbjct 132512594 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTG 132512535
Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525
| |||||| || | || ||| ||| | ||| || | || || || || | |
Sbjct 132512534 CGCGGCAAGCTGGACGAGTC---ACGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATC 132512478
Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585
|| | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||
Sbjct 132512477 GAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTG 132512418
Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645
||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | ||||
Sbjct 132512417 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 132512358
Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705
| |||||| ||| ||||| || | || ||||||||||| || || || || || ||
Sbjct 132512357 CTATACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 132512298
Query 243706 AACTTCTTCGAAAAGCGTGT 243725
||||||||||| ||||| ||
Sbjct 132512297 AACTTCTTCGAGAAGCGCGT 132512278
>seq9
Length=700855599
Score = 107 bits (118), Expect = 4e-18
Identities = 158/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561
||| || | || || || || | | | | ||| ||||| ||||||| | || ||| |
Sbjct 304702762 ATCGTCTCCGAGGCCGTGGATATCAAGAGGGAGTTCATCTGCGACGTGCTCCCCTGCGCG 304702821
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
|| | || ||||||| || |||| | ||||||||||||| ||||| | ||||||| |
Sbjct 304702822 CTCGTGGGTATGAACTTCGACCTCACGAGACAGTACATCGAGTTCGTCGTCGACCGCCTG 304702881
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
|||| ||| | || | | |||| |||| | ||| ||||| || | || ||||||
Sbjct 304702882 CTCATGGCGTTGGGCTGTAAGAAGCTGTATGATGCCACCAACCCATTCGACTGGATGGAG 304702941
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
||||| || || | || || || ||| |||| || ||||| ||
Sbjct 304702942 CTCATCTCCCTGTAGGGCAAGACCAACATCTTTGAGAAGCGCGT 304702985
>seq10
Length=712180895
Score = 100 bits (110), Expect = 6e-16
Identities = 159/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGC 243570
|| || || || | ||| | ||| || | || || || | || ||| ||| | |||
Sbjct 262131491 GAGGCCGTGGATATCGAGAGGGAGTTTGTCTGTGATGCGCTCCCCTGCGCGCTCGTCGGC 262131550
Query 243571 ATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630
|||||| || |||||| | ||||||||||| ||||| |||||| || | |||| |||
Sbjct 262131551 ATGAACGACGACCTCATGAGCCAGTACATCGAGTTCGTTGCCGACAGCCTGCTCATGGCG 262131610
Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCG 243690
| || | |||| ||||||| ||| ||||| || || |||||||||| | |
Sbjct 262131611 TTGGGATGCAAGAAGCTGTACAATGCCACCAACCCATTCAACTGGATGGAGCTCA-TCCC 262131669
Query 243691 CTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
|| || || || || ||| | ||||| ||||| ||||| || || ||
Sbjct 262131670 CTGCAGGGCAAGACCAACATATTCGAGAAGCGCGTCAGCGAGTAGCA 262131716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1100772639642900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |