Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq13 167 5e-36 seq14 154 3e-32 seq9 107 4e-18 seq10 100 6e-16 >seq13 Length=727576108 Score = 167 bits (184), Expect = 5e-36 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || || || ||| Sbjct 164670051 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 164669992 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 164669991 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 164669932 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | ||| Sbjct 164669931 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTC 164669872 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| | | || || || || | | Sbjct 164669871 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATC 164669815 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||| Sbjct 164669814 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 164669755 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 164669754 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 164669695 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| ||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 164669694 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 164669635 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 164669634 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 164669603 >seq14 Length=755408349 Score = 154 bits (170), Expect = 3e-32 Identities = 300/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || || || ||| Sbjct 132512714 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTTC 132512655 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 132512654 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 132512595 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | || Sbjct 132512594 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTG 132512535 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || ||| ||| | ||| || | || || || || | | Sbjct 132512534 CGCGGCAAGCTGGACGAGTC---ACGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATC 132512478 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || || Sbjct 132512477 GAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTG 132512418 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 132512417 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 132512358 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | |||||| ||| ||||| || | || ||||||||||| || || || || || || Sbjct 132512357 CTATACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 132512298 Query 243706 AACTTCTTCGAAAAGCGTGT 243725 ||||||||||| ||||| || Sbjct 132512297 AACTTCTTCGAGAAGCGCGT 132512278 >seq9 Length=700855599 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 ||| || | || || || || | | | | ||| ||||| ||||||| | || ||| | Sbjct 304702762 ATCGTCTCCGAGGCCGTGGATATCAAGAGGGAGTTCATCTGCGACGTGCTCCCCTGCGCG 304702821 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | || ||||||| || |||| | ||||||||||||| ||||| | ||||||| | Sbjct 304702822 CTCGTGGGTATGAACTTCGACCTCACGAGACAGTACATCGAGTTCGTCGTCGACCGCCTG 304702881 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 |||| ||| | || | | |||| |||| | ||| ||||| || | || |||||| Sbjct 304702882 CTCATGGCGTTGGGCTGTAAGAAGCTGTATGATGCCACCAACCCATTCGACTGGATGGAG 304702941 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| || || | || || || ||| |||| || ||||| || Sbjct 304702942 CTCATCTCCCTGTAGGGCAAGACCAACATCTTTGAGAAGCGCGT 304702985 >seq10 Length=712180895 Score = 100 bits (110), Expect = 6e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGC 243570 || || || || | ||| | ||| || | || || || | || ||| ||| | ||| Sbjct 262131491 GAGGCCGTGGATATCGAGAGGGAGTTTGTCTGTGATGCGCTCCCCTGCGCGCTCGTCGGC 262131550 Query 243571 ATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630 |||||| || |||||| | ||||||||||| ||||| |||||| || | |||| ||| Sbjct 262131551 ATGAACGACGACCTCATGAGCCAGTACATCGAGTTCGTTGCCGACAGCCTGCTCATGGCG 262131610 Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCG 243690 | || | |||| ||||||| ||| ||||| || || |||||||||| | | Sbjct 262131611 TTGGGATGCAAGAAGCTGTACAATGCCACCAACCCATTCAACTGGATGGAGCTCA-TCCC 262131669 Query 243691 CTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || || || || || ||| | ||||| ||||| ||||| || || || Sbjct 262131670 CTGCAGGGCAAGACCAACATATTCGAGAAGCGCGTCAGCGAGTAGCA 262131716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100772639642900