Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq129631 295 2e-75 >seq129631 Length=630463 Score = 295 bits (326), Expect = 2e-75 Identities = 682/1020 (67%), Gaps = 26/1020 (3%) Strand=Plus/Plus Query 51941 TATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTC 52000 ||||| ||||| || || || || || || ||||||| |||||| | ||||| || Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322 Query 52001 TGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCA 52060 ||| |||| ||||| |||| | || | || | || |||| ||| || ||||| | Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCTTCT 524382 Query 52061 AACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAG 52120 |||||| |||| ||||| | |||||| | ||||| | | | ||||| || ||||| Sbjct 524383 AACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAA 524442 Query 52121 GGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGG 52180 ||| | | || |||| | ||| | || || || ||||| ||||| || || ||| Sbjct 524443 GGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACATGG 524502 Query 52181 ATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTATACCCACATCATTCGT 52240 |||||||| |||||||| || ||||| |||||||||||||| ||||| || || ||| | Sbjct 524503 ATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGA 524562 Query 52241 AATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGTAACTAACGAACACATCAAG 52300 |||||| ||| | ||| | | |||||||| || | |||| || |||| || Sbjct 524563 AATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTAAT 524622 Query 52301 GCACGAGCAATTGGCATCTCCCAATATTATGACGAACTCCAGCAACTCACTGCATTATGG 52360 | || ||| | || || |||||||| || | || | || || | ||| Sbjct 524623 GATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGG 524682 Query 52361 CAGTTGTTCGGAGAAGGGAGCCA------TGCTGGTCA------TGAAATTAGTCTGCGT 52408 || || | |||||||| || | ||| | |||||| | | | Sbjct 524683 CATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAAAC 524742 Query 52409 GAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGC 52468 || || || | || ||| | || | || | | || | | | ||||| ||| | Sbjct 524743 TTATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATTAGA 524802 Query 52469 TTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAAT 52528 || || || || |||||||| ||||| || || || ||| | | |||||||||||||| Sbjct 524803 TTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAATGGAAGGAAAT 524862 Query 52529 GCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCAC 52588 || || ||||| || ||||| ||||||||||||||| | || ||||| |||||||| || Sbjct 524863 GCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGAACTCAACAT 524922 Query 52589 ATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCT--- 52645 || | || || | | | |||| || || | | ||| ||| | || | Sbjct 524923 ATTTTAAATATTTTAAATAACGAAAAAAATAACGAAAATATG---AAAAATACTATTTTA 524979 Query 52646 GAATGCCGCCAAGAATGCCA-GAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTG 52704 |||||| | ||| | || | ||| | || | |||| | ||||||| || | || Sbjct 524980 GAATGCAGAGAAG-AGGCAATTAAAATATTTATATCTGCTTCAGAACAAGAAAAAAAATG 525038 Query 52705 GGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAA-CAAGCAAATTCTATGCG 52763 ||| | |||||||| ||||||| || ||| | || ||||| |||| | || |||| Sbjct 525039 GGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATCAAG-ATATATTATGTC 525097 Query 52764 GATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGATT--AGATGCTCCATT 52821 |||| | |||||||| || ||| |||||||||| ||| | || || | ||| || || Sbjct 525098 AATATATAGAATATATTACTAATGTTCGTATGCATGCAATAGGTTTTAAAATG--CCTTT 525155 Query 52822 CAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACA 52881 || | | ||||| ||||| ||||| ||| | ||||| ||||| ||| | |||| Sbjct 525156 TGAAAAAAAATCAAACCCAATTCCTTGGATCAATTCTTGGTTAAATTCTGATTATATACA 525215 Query 52882 GGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGT 52941 || || || ||||| || || ||||| || | || || |||||||| || ||||| Sbjct 525216 AACGGCCCCTCAAGAAACAGAAATCAGTTCATATTTAGTGGGCCAAATTGAATCAGAAGT 525275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169098401150796