Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_010106.1
Length=52975
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 295 2e-75
>seq129631
Length=630463
Score = 295 bits (326), Expect = 2e-75
Identities = 682/1020 (67%), Gaps = 26/1020 (3%)
Strand=Plus/Plus
Query 51941 TATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTC 52000
||||| ||||| || || || || || || ||||||| |||||| | ||||| ||
Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322
Query 52001 TGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCA 52060
||| |||| ||||| |||| | || | || | || |||| ||| || ||||| |
Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCTTCT 524382
Query 52061 AACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAG 52120
|||||| |||| ||||| | |||||| | ||||| | | | ||||| || |||||
Sbjct 524383 AACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAA 524442
Query 52121 GGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGG 52180
||| | | || |||| | ||| | || || || ||||| ||||| || || |||
Sbjct 524443 GGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACATGG 524502
Query 52181 ATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTATACCCACATCATTCGT 52240
|||||||| |||||||| || ||||| |||||||||||||| ||||| || || ||| |
Sbjct 524503 ATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGA 524562
Query 52241 AATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGTAACTAACGAACACATCAAG 52300
|||||| ||| | ||| | | |||||||| || | |||| || |||| ||
Sbjct 524563 AATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTAAT 524622
Query 52301 GCACGAGCAATTGGCATCTCCCAATATTATGACGAACTCCAGCAACTCACTGCATTATGG 52360
| || ||| | || || |||||||| || | || | || || | |||
Sbjct 524623 GATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGG 524682
Query 52361 CAGTTGTTCGGAGAAGGGAGCCA------TGCTGGTCA------TGAAATTAGTCTGCGT 52408
|| || | |||||||| || | ||| | |||||| | | |
Sbjct 524683 CATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAAAC 524742
Query 52409 GAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGC 52468
|| || || | || ||| | || | || | | || | | | ||||| ||| |
Sbjct 524743 TTATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATTAGA 524802
Query 52469 TTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAAT 52528
|| || || || |||||||| ||||| || || || ||| | | ||||||||||||||
Sbjct 524803 TTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAATGGAAGGAAAT 524862
Query 52529 GCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCAC 52588
|| || ||||| || ||||| ||||||||||||||| | || ||||| |||||||| ||
Sbjct 524863 GCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGAACTCAACAT 524922
Query 52589 ATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCT--- 52645
|| | || || | | | |||| || || | | ||| ||| | || |
Sbjct 524923 ATTTTAAATATTTTAAATAACGAAAAAAATAACGAAAATATG---AAAAATACTATTTTA 524979
Query 52646 GAATGCCGCCAAGAATGCCA-GAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTG 52704
|||||| | ||| | || | ||| | || | |||| | ||||||| || | ||
Sbjct 524980 GAATGCAGAGAAG-AGGCAATTAAAATATTTATATCTGCTTCAGAACAAGAAAAAAAATG 525038
Query 52705 GGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAA-CAAGCAAATTCTATGCG 52763
||| | |||||||| ||||||| || ||| | || ||||| |||| | || ||||
Sbjct 525039 GGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATCAAG-ATATATTATGTC 525097
Query 52764 GATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGATT--AGATGCTCCATT 52821
|||| | |||||||| || ||| |||||||||| ||| | || || | ||| || ||
Sbjct 525098 AATATATAGAATATATTACTAATGTTCGTATGCATGCAATAGGTTTTAAAATG--CCTTT 525155
Query 52822 CAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACA 52881
|| | | ||||| ||||| ||||| ||| | ||||| ||||| ||| | ||||
Sbjct 525156 TGAAAAAAAATCAAACCCAATTCCTTGGATCAATTCTTGGTTAAATTCTGATTATATACA 525215
Query 52882 GGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGT 52941
|| || || ||||| || || ||||| || | || || |||||||| || |||||
Sbjct 525216 AACGGCCCCTCAAGAAACAGAAATCAGTTCATATTTAGTGGGCCAAATTGAATCAGAAGT 525275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169098401150796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |