Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq14 172 7e-38
seq13 158 1e-33
seq129631 82.4 9e-11
>seq14
Length=755408349
Score = 172 bits (190), Expect = 7e-38
Identities = 317/454 (70%), Gaps = 12/454 (3%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || || || ||||||||||||||||| ||||| || | || | ||| ||||||
Sbjct 132512268 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 132512327
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
| || || ||||| | | ||| | | || ||| || |||| | |||| ||
Sbjct 132512328 CCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 132512385
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | |||| |||| ||||||| |||| || |||||| |||| |||
Sbjct 132512386 CGGTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCG 132512445
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || |||||||| ||| |||| || |||| || |||||||| || ||||| ||
Sbjct 132512446 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 132512505
Query 125996 TGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051
| | ||| | |||| | | ||||| | ||| | || ||| || ||| ||
Sbjct 132512506 AAGACGCGTGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 132512561
Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111
|| ||| || |||||||| ||||||||||| || || |||||| || || |||||
Sbjct 132512562 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 132512621
Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
||| || |||||||| | |||||| || || || || || |||||||||||||| |||||
Sbjct 132512622 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 132512681
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
||| || ||||| || | || ||||| || |||
Sbjct 132512682 CACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 132512715
Score = 125 bits (138), Expect = 9e-24
Identities = 361/547 (66%), Gaps = 10/547 (2%)
Strand=Plus/Plus
Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669
||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| ||
Sbjct 111022653 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 111022712
Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729
| ||| || | || | || || ||| || ||| |||||||| |||||
Sbjct 111022713 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 111022769
Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786
|| ||||| | |||| |||||| |||||||| ||| || ||||| | ||
Sbjct 111022770 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGC 111022829
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| || ||||| || |||||||| || ||| |||| ||||| || |||||||| ||
Sbjct 111022830 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 111022889
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|||||||| | || ||| | ||| || || |||||||| || | || || ||
Sbjct 111022890 GCGATGACGATGACGCCGCTGTCGCCGCGGAAACCGTCCATCTCGGTGAGCAGCTGGTTC 111022949
Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965
| || || ||||| || || || | | || | ||||| | ||| ||| |||||
Sbjct 111022950 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGAT-ACCCGTGCCGCGCTGCCGGCCGAC 111023008
Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025
|||||| || || |||||||| || | ||||| | || ||| | ||||
Sbjct 111023009 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGCTGTCCTTGGCCTTGTTGAAGAG 111023068
Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085
|| || || | | || || || ||||| ||||| || | || | | ||| |||
Sbjct 111023069 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGG-ACA 111023127
Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144
| || |||||| ||| || || |||||||| || ||| || || ||||||||||
Sbjct 111023128 GCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCG 111023187
Query 11145 TCCCAGG 11151
|||| ||
Sbjct 111023188 TCCCCGG 111023194
Score = 86.0 bits (94), Expect = 7e-12
Identities = 194/289 (67%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849
|||||||| || || | || | ||| || | ||| ||| | ||| || || ||
Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209
Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909
| |||| |||||| || | | ||||| |||||||||||||||| || |||||||
Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149
Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 10963
|| || || | |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095
Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 11021
|| || ||||||||||| | || || || || || ||| || ||| |||| |
Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 646004037
Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070
||| ||| || || | |||||| ||||| |||||||| ||||| ||
Sbjct 646004036 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988
>seq13
Length=727576108
Score = 158 bits (174), Expect = 1e-33
Identities = 314/454 (69%), Gaps = 12/454 (3%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || || || ||||||||||||||||| ||||| || | || ||| ||||||
Sbjct 164669605 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 164669664
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
| || || ||||| | | ||| | | || ||| || |||| | |||| ||
Sbjct 164669665 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 164669722
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | |||| |||| ||||||| ||| || |||||| |||| |||
Sbjct 164669723 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 164669782
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| ||||||||||| ||| |||| || |||| || |||||||| || |||||| ||
Sbjct 164669783 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCG 164669842
Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051
| | | | | |||| | | ||| | | ||| | || ||| || ||| ||
Sbjct 164669843 AAGACGCGGGACTCGTCCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CA-GGCGAA 164669898
Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111
|| ||| || |||||||| ||||||||||| || || |||||| || || |||||
Sbjct 164669899 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 164669958
Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
||| || |||||||| | |||||| || || || || || |||||||||||||| |||||
Sbjct 164669959 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 164670018
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|| || ||||| || | || ||||| || |||
Sbjct 164670019 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052
Score = 107 bits (118), Expect = 2e-18
Identities = 357/547 (65%), Gaps = 10/547 (2%)
Strand=Plus/Minus
Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669
||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| ||
Sbjct 142204284 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 142204225
Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729
| ||| || | || | || || ||| || ||| |||||||| |||||
Sbjct 142204224 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 142204168
Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786
|| ||||| | |||| |||||| |||||||| || || ||||| | ||
Sbjct 142204167 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCCGGCAGCCCCACGGACACCTGC 142204108
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| || ||||| || |||||||| || || |||| ||||| || |||||||| ||
Sbjct 142204107 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 142204048
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|||||||| | || ||| | ||| ||||| |||||||| || | || || ||
Sbjct 142204047 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 142203988
Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965
| || || ||||| || || || | | || | |||| | ||| ||| |||||
Sbjct 142203987 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGAC 142203929
Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025
|||||| || || |||||||| || | ||||| || || ||| | || |
Sbjct 142203928 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAG 142203869
Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085
|| || || | | || || || ||||| ||||| || | || | | ||| |||
Sbjct 142203868 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGG-ACA 142203810
Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144
| || ||| || ||| || || |||||||| || ||| || || ||||||||||
Sbjct 142203809 GCGAGAAGAACGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGTAGCGTCTTCCCCG 142203750
Query 11145 TCCCAGG 11151
| || ||
Sbjct 142203749 TTCCCGG 142203743
Score = 89.7 bits (98), Expect = 6e-13
Identities = 195/289 (67%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849
|||||||| || || | || | ||| || | ||| ||| | ||| || || ||
Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407
Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909
| |||| |||||| || | | ||||| |||||||||||||||| || |||||||
Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347
Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 10963
|| || || | |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293
Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 11021
|| || ||||||||||| | ||| || || || || ||| || ||| |||| |
Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 662716235
Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070
||| ||| || || | |||||| ||||| |||||||| ||||| ||
Sbjct 662716234 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186
>seq129631
Length=630463
Score = 82.4 bits (90), Expect = 9e-11
Identities = 196/287 (68%), Gaps = 16/287 (6%)
Strand=Plus/Minus
Query 10873 ATCAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 10931
|| ||| |||||||| || |||| | |||||| | |||||||| | ||||||||
Sbjct 300180 ATTAAATCCATCCATTTCCA-CAAGCATTTGATTTAATGTTTGTTCTCTTTCATCAT--- 300125
Query 10932 CGGGCAT-ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987
|| || ||| || |||| | ||| ||| || || ||||||||||| || ||
Sbjct 300124 -GGCCACCACCTAATCCAGCACCTCTTTGACGACCAACTGCATCAATTTCATCAATAAAT 300066
Query 10988 ACGATACACGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCAC 11045
| ||||| ||| ||||||| | || |||||| ||||||| ||||| || |
Sbjct 300065 ATAATACATGGTGCAGATTTTCTAG--CATGTTCAAACATATCTCTTACTCTAGACGCCC 300008
Query 11046 CGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTG 11104
| || || ||||||||||| ||||||| | | ||| |||| | || || || ||
Sbjct 300007 CTACTCCAACAAACATTTCAACAAAATCAGAACCAGAA-ATTGTAAAAAATGGAACTTTT 299949
Query 11105 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
| |||||| || || ||| || || | || || || || |||||
Sbjct 299948 GCTTCACCTGCTATCGCTTTTGCAAGTAATGTTTTACCAGTTCCAGG 299902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596240028352720
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