Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq14 172 7e-38 seq13 158 1e-33 seq129631 82.4 9e-11 >seq14 Length=755408349 Score = 172 bits (190), Expect = 7e-38 Identities = 317/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 132512268 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 132512327 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 132512328 CCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 132512385 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| |||| || |||||| |||| ||| Sbjct 132512386 CGGTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCG 132512445 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || |||||||| ||| |||| || |||| || |||||||| || ||||| || Sbjct 132512446 CAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCG 132512505 Query 125996 TGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | ||| | |||| | | ||||| | ||| | || ||| || ||| || Sbjct 132512506 AAGACGCGTGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 132512561 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 132512562 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 132512621 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 132512622 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 132512681 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || ||||| || | || ||||| || ||| Sbjct 132512682 CACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 132512715 Score = 125 bits (138), Expect = 9e-24 Identities = 361/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 111022653 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 111022712 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | || || ||| || ||| |||||||| ||||| Sbjct 111022713 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 111022769 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| |||||| |||||||| ||| || ||||| | || Sbjct 111022770 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGC 111022829 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || ||| |||| ||||| || |||||||| || Sbjct 111022830 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 111022889 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | || ||| | ||| || || |||||||| || | || || || Sbjct 111022890 GCGATGACGATGACGCCGCTGTCGCCGCGGAAACCGTCCATCTCGGTGAGCAGCTGGTTC 111022949 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || ||||| || || || | | || | ||||| | ||| ||| ||||| Sbjct 111022950 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGAT-ACCCGTGCCGCGCTGCCGGCCGAC 111023008 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| || | ||||| | || ||| | |||| Sbjct 111023009 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGCTGTCCTTGGCCTTGTTGAAGAG 111023068 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || ||||| ||||| || | || | | ||| ||| Sbjct 111023069 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGG-ACA 111023127 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || |||||||| || ||| || || |||||||||| Sbjct 111023128 GCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCG 111023187 Query 11145 TCCCAGG 11151 |||| || Sbjct 111023188 TCCCCGG 111023194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/289 (67%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 10963 || || || | |||||| ||| | |||||| | ||| | |||| | || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 11021 || || ||||||||||| | || || || || || ||| || ||| |||| | Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 646004037 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| ||| || || | |||||| ||||| |||||||| ||||| || Sbjct 646004036 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 >seq13 Length=727576108 Score = 158 bits (174), Expect = 1e-33 Identities = 314/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 164669605 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 164669664 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 164669665 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 164669722 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 164669723 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 164669782 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| |||| || |||| || |||||||| || |||||| || Sbjct 164669783 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCG 164669842 Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | |||| | | ||| | | ||| | || ||| || ||| || Sbjct 164669843 AAGACGCGGGACTCGTCCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CA-GGCGAA 164669898 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 164669899 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 164669958 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 164669959 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 164670018 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 164670019 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052 Score = 107 bits (118), Expect = 2e-18 Identities = 357/547 (65%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 142204284 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 142204225 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | || || ||| || ||| |||||||| ||||| Sbjct 142204224 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT---TGGCG 142204168 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| |||||| |||||||| || || ||||| | || Sbjct 142204167 CTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCCGGCAGCCCCACGGACACCTGC 142204108 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || || |||| ||||| || |||||||| || Sbjct 142204107 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 142204048 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | || ||| | ||| ||||| |||||||| || | || || || Sbjct 142204047 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 142203988 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || ||||| || || || | | || | |||| | ||| ||| ||||| Sbjct 142203987 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGAC 142203929 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| || | ||||| || || ||| | || | Sbjct 142203928 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAG 142203869 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || ||||| ||||| || | || | | ||| ||| Sbjct 142203868 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGG-ACA 142203810 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || ||| || ||| || || |||||||| || ||| || || |||||||||| Sbjct 142203809 GCGAGAAGAACGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGTAGCGTCTTCCCCG 142203750 Query 11145 TCCCAGG 11151 | || || Sbjct 142203749 TTCCCGG 142203743 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/289 (67%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 10963 || || || | |||||| ||| | |||||| | ||| | |||| | || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 11021 || || ||||||||||| | ||| || || || || ||| || ||| |||| | Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 662716235 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| ||| || || | |||||| ||||| |||||||| ||||| || Sbjct 662716234 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 >seq129631 Length=630463 Score = 82.4 bits (90), Expect = 9e-11 Identities = 196/287 (68%), Gaps = 16/287 (6%) Strand=Plus/Minus Query 10873 ATCAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 10931 || ||| |||||||| || |||| | |||||| | |||||||| | |||||||| Sbjct 300180 ATTAAATCCATCCATTTCCA-CAAGCATTTGATTTAATGTTTGTTCTCTTTCATCAT--- 300125 Query 10932 CGGGCAT-ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987 || || ||| || |||| | ||| ||| || || ||||||||||| || || Sbjct 300124 -GGCCACCACCTAATCCAGCACCTCTTTGACGACCAACTGCATCAATTTCATCAATAAAT 300066 Query 10988 ACGATACACGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCAC 11045 | ||||| ||| ||||||| | || |||||| ||||||| ||||| || | Sbjct 300065 ATAATACATGGTGCAGATTTTCTAG--CATGTTCAAACATATCTCTTACTCTAGACGCCC 300008 Query 11046 CGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTG 11104 | || || ||||||||||| ||||||| | | ||| |||| | || || || || Sbjct 300007 CTACTCCAACAAACATTTCAACAAAATCAGAACCAGAA-ATTGTAAAAAATGGAACTTTT 299949 Query 11105 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | |||||| || || ||| || || | || || || || ||||| Sbjct 299948 GCTTCACCTGCTATCGCTTTTGCAAGTAATGTTTTACCAGTTCCAGG 299902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596240028352720