Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq34805 114 5e-21 seq129631 102 3e-17 >seq34805 Length=751 Score = 114 bits (126), Expect = 5e-21 Identities = 217/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 111 TTTTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGT 170 |||||| | ||| |||| |||| || || || ||||| | | ||||| || || | Sbjct 618 TTTTTATTAATTTTGCCAATTCAATTGTAGCATATACATCCGATGTAGCATCATGAGCAT 559 Query 171 TGCTATGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGC--GAAAGCTCGGTAGACC 228 | | |||| ||| ||| ||||| ||||||| || || | |||| | | || || Sbjct 558 TACAATGTGATATATTATTTGCTTTTGTTAAAT-CTGAAAGTTTGAAAACAGGTGAG-CC 501 Query 229 GTCATCATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAAC 288 ||||||| |||||| ||||| || | || | || | ||| || || | | || Sbjct 500 AAATTCATTTTTAGGCCATTTTATACCATTTGGTCTCAAAGAATAACATGCTCTAACAAT 441 Query 289 ATCCAGTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAA 348 || || ||||||||||| ||||| | || | ||| ||||| | |||||||| | || Sbjct 440 ATTTAGCAAATCCCAGCGAGAGTTGTTATTTTTCCAACTCCACTCATAAGGATCTAAAAA 381 Query 349 ATTACGATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAG 408 |||||||||||| | ||| | ||| | ||| || || |||| | ||| || || || | Sbjct 380 ATTACGATAAAATATGTTTCTTGTAATTTCATCATCAAAACAAATATTATTATAACCTAT 321 Query 409 AATACAGGTCTTCGGT 424 ||||| || || ||| Sbjct 320 TATACAAGTATTAGGT 305 >seq129631 Length=630463 Score = 102 bits (112), Expect = 3e-17 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 24380 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 24439 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 130148 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 130089 Query 24440 CCAGCAAGG 24448 ||||||||| Sbjct 130088 CCAGCAAGG 130080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198396822582972