Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq129631 125 2e-24 >seq129631 Length=630463 Score = 125 bits (138), Expect = 2e-24 Identities = 233/342 (68%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 27564 TCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTG 27623 ||| | |||||||||| ||| ||| ||| |||| || || || || || || | Sbjct 140993 TCCTAACATTTGCATCGTACCGCCAATGTTAACTATAATTTCTGTTGTATAACGTTCAAG 140934 Query 27624 CCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACC 27683 || | ||||||||||| ||||| ||| || ||| || | ||| || ||| ||| Sbjct 140933 ACCATTTTGGTCTTGCCATTTTCTAGTTTGAAGGGATCCTTCAATATATACTTGAGAACC 140874 Query 27684 TTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCA 27743 |||| ||| ||| | || | | |||||| | ||| |||| || | | | |||||| Sbjct 140873 TTTTCTCAAATATTCTCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTATGCCA 140814 Query 27744 TTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCGAC 27803 ||| || | ||| || | ||| ||||| | ||||||| ||| | |||||| || || | Sbjct 140813 TTCTGTTTTCTCTTTATTTTCACCAGTATTTTTATCTTTCCAGTTCTCTGAAGTTGCAAG 140754 Query 27804 TGTCAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCGAC 27863 ||||| || | | || | || ||| ||||||||| || || ||||| || | Sbjct 140753 TGTCATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGGCCTAA 140694 Query 27864 CCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCAT 27905 | || | | ||| || |||||||| |||||||| ||||| Sbjct 140693 GTGACCAATTAAGATTACTTTATTTACACCTCTACTTGCCAT 140652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137286039720024