Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq129631 170 2e-37 >seq129631 Length=630463 Score = 170 bits (188), Expect = 2e-37 Identities = 302/438 (69%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 139685 TTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTG 139744 |||||||| ||||| | |||||||||||||| | | || ||||| | || |||| Sbjct 522618 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 522559 Query 139745 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCC 139804 || ||||| || | | | |||||| |||| |||||||||||||||| | | ||| || Sbjct 522558 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 522499 Query 139805 GCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAG 139864 ||||| || | || || ||||| || || || || || || | || || ||||| | Sbjct 522498 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 522439 Query 139865 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 139924 || || ||| || |||||| |||| |||| | ||| | |||| || ||| Sbjct 522438 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 522379 Query 139925 ATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTT 139984 || |||||||| || || || || || || | || ||| || | |||||| | Sbjct 522378 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 522319 Query 139985 GCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAACTAAA 140043 | ||| | || || | | ||| | || ||| ||| || | |||||| |||||||| Sbjct 522318 GTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAA 522260 Query 140044 TTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTTGCTTATT 140103 ||| || ||||| || | || |||| ||||||||| || |||||||| |||| | | Sbjct 522259 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 522200 Query 140104 CGCAACAGCATTATAAAA 140121 | || ||||||||||| Sbjct 522199 GGAAATTGCATTATAAAA 522182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531417095333920