Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq14 194 3e-44
seq13 187 4e-42
seq10 109 9e-19
seq1 89.7 8e-13
>seq14
Length=755408349
Score = 194 bits (214), Expect = 3e-44
Identities = 531/807 (66%), Gaps = 30/807 (4%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || ||| || ||||| | |||| |||||
Sbjct 132512283 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 132512342
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| || ||||| | || || ||| |||| | ||| || || || ||
Sbjct 132512343 GGTGGCGTTGTATAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 132512402
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | |||| | || | ||| || || | ||| ||| ||||| || |
Sbjct 132512403 GATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGCAGCGCGTCGCA 132512462
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885
| |||||| |||| || || || || |||| || |||| |||| ||| ||||
Sbjct 132512463 GACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGTGACTCGT- 132512521
Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942
|| ||||||| || |||| || | |||||||| || ||||||||||||||
Sbjct 132512522 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 132512573
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
|||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| |||
Sbjct 132512574 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTT 132512633
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061
|||||||| || |||| |||| ||| | | | | || ||||| ||||||||| || |
Sbjct 132512634 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCAGGCGA 132512692
Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120
| || |||| | ||| | || ||| | | | | |||| | ||||||
Sbjct 132512693 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCACCGTCGATCCAGCGCAGGGCCCAG 132512748
Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176
|| ||| ||||| ||||||| ||| |||| |||| || | | |||||
Sbjct 132512749 TCGGCC----TTGCGGCGCACGGCGGGTATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 132512804
Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236
||| | || ||| || | || ||| |||||||| || | ||| | ||
Sbjct 132512805 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 132512864
Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296
|||||||| ||||| ||| |||||| | ||||| |||||| || |
Sbjct 132512865 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 132512924
Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356
|||||| | || || | || | ||||| | ||| || ||||| || | |||
Sbjct 132512925 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCAC 132512984
Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416
||| |||||||| || | |||||| ||| ||| | | |||||||| | ||||
Sbjct 132512985 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTGGTGTCCCAGTGGCGCGCGTCGGA 132513044
Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443
|| | || ||||| || ||| ||||
Sbjct 132513045 GGAGAGGTCCACCTCCTCGGCGGTCCA 132513071
>seq13
Length=727576108
Score = 187 bits (206), Expect = 4e-42
Identities = 528/804 (66%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || || || ||||| | |||| |||||
Sbjct 164669620 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 164669679
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| || ||||| | || || ||| |||| | ||| || || || ||
Sbjct 164669680 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 164669739
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || | ||| || || | ||| ||||||||| || |
Sbjct 164669740 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 164669799
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885
| |||||| |||| || || || || |||| ||| |||| |||| || ||||
Sbjct 164669800 GACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAAGACGCGGGACTCGT- 164669858
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
|| ||||||| | | ||| | | |||||||| || |||||||||||||| ||
Sbjct 164669859 --CCAGCTTGCCGCGGAGGATGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCC 164669913
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| ||
Sbjct 164669914 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTCTT 164669973
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064
|||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || |
Sbjct 164669974 GAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGG 164670032
Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123
| |||| | ||| | || ||| | | | | | |||| | ||||| ||
Sbjct 164670033 CGACGATGCGCTCCGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGCGCCCAGTCG 164670088
Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179
||| ||||| ||||||| ||| |||| |||| || | | ||||| |||
Sbjct 164670089 GCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 164670144
Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239
| || ||| || | || ||| |||||||| || | ||| | || ||
Sbjct 164670145 GACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTTCTC 164670204
Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299
|||||| ||||| ||| |||||| | ||||| |||||| || ||||
Sbjct 164670205 GATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACATGAA 164670264
Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359
||| | || || | || | ||||| | ||| || ||||| || | ||||||
Sbjct 164670265 CCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTG 164670324
Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419
|||||||| || | |||||| ||| ||| || | |||||||| | |||| ||
Sbjct 164670325 GGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCCAGTGGCGCGCGTCGGAGGA 164670384
Query 160420 CAAATCAACCTCTTCCGCGCTCCA 160443
| || ||||| || ||| ||||
Sbjct 164670385 GAGGTCCACCTCCTCGGCGGTCCA 164670408
>seq10
Length=712180895
Score = 109 bits (120), Expect = 9e-19
Identities = 233/343 (68%), Gaps = 10/343 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| | |||||||||||||| || || || ||||| | |||||||||
Sbjct 262131699 CTTCTCGAATATGTTGGTCTTGCCCTGCAGGGG-ATGAGCTCCATCCAGTTGAATGGGTT 262131641
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| | | || ||||| |||| | ||| |||| ||||| || || || ||
Sbjct 262131640 GGTGGCATTGTACAGCTTCTTGCATCCCAACGCCATGAGCAGGCTGTCGGCAACGAACTC 262131581
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || ||| || || | ||| ||||||||| || |
Sbjct 262131580 GATGTACTGGCTCATGAGGTCGTCGTTCATGCCGACGAGCGCGCAGGGGAGCGCATCACA 262131521
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888
| ||||||| |||| || || || || |||| ||| |||| | ||| | | ||
Sbjct 262131520 GACAAACTCCCTCTCGATATCCACGGCCTCGGACACGATCTTGAAAACA---TAGGACTT 262131464
Query 159889 --CG-GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
|| ||||||| | | || ||| | | |||||||| || ||||||||||| || ||
Sbjct 262131463 GTCGAGCTTGCCGCAGAGGTTGTCAT---AGAGGAGGCATGCGAAGTCGCAGTGTAGACC 262131407
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988
|||||| || ||||||| || |||||| | | ||| |||||||
Sbjct 262131406 CTCGTCTCGGGAGATGAGCTAGTTGGAGAAGGTGACGCCCGGC 262131364
>seq1
Length=593586810
Score = 89.7 bits (98), Expect = 8e-13
Identities = 130/180 (72%), Gaps = 13/180 (7%)
Strand=Plus/Plus
Query 159814 GGGGAGCGCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC 159871
||||||||| || ||||| |||||| |||| || || || || |||| |||||||
Sbjct 278696820 GGGGAGCGCATC--ACAGATGAACTCCCTCTCGATATCCACGGCCTCGGAGACAATCTCG 278696877
Query 159872 GAGACACG---TTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCA 159928
|||| || || || | |||||| || | | ||| | | |||||||| ||
Sbjct 278696878 AAGACGCGGGATTTGT---CGAGCTTGCTGAAGAGGATGTCGT---AGAGGAGGCAGGCG 278696931
Query 159929 AAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988
|||||| |||||| ||||| || || ||||||| ||||||||| | |||||||||||
Sbjct 278696932 AAGTCGTAGTGCATACCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGC 278696991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793672891555040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |