Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14 194 3e-44 seq13 187 4e-42 seq10 109 9e-19 seq1 89.7 8e-13 >seq14 Length=755408349 Score = 194 bits (214), Expect = 3e-44 Identities = 531/807 (66%), Gaps = 30/807 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 132512283 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 132512342 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| || || || || Sbjct 132512343 GGTGGCGTTGTATAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 132512402 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| | || | ||| || || | ||| ||| ||||| || | Sbjct 132512403 GATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGCAGCGCGTCGCA 132512462 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| |||| ||| |||| Sbjct 132512463 GACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGTGACTCGT- 132512521 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 132512522 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 132512573 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| Sbjct 132512574 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTT 132512633 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| |||| ||| | | | | || ||||| ||||||||| || | Sbjct 132512634 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCAGGCGA 132512692 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | |||| | |||||| Sbjct 132512693 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCACCGTCGATCCAGCGCAGGGCCCAG 132512748 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| ||||||| ||| |||| |||| || | | ||||| Sbjct 132512749 TCGGCC----TTGCGGCGCACGGCGGGTATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 132512804 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| |||||||| || | ||| | || Sbjct 132512805 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 132512864 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| |||||| | ||||| |||||| || | Sbjct 132512865 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 132512924 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||| | ||| || ||||| || | ||| Sbjct 132512925 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCAC 132512984 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| |||||||| || | |||||| ||| ||| | | |||||||| | |||| Sbjct 132512985 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTGGTGTCCCAGTGGCGCGCGTCGGA 132513044 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| || ||| |||| Sbjct 132513045 GGAGAGGTCCACCTCCTCGGCGGTCCA 132513071 >seq13 Length=727576108 Score = 187 bits (206), Expect = 4e-42 Identities = 528/804 (66%), Gaps = 24/804 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 164669620 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 164669679 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| || || || || Sbjct 164669680 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 164669739 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||| || | Sbjct 164669740 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 164669799 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| ||| |||| |||| || |||| Sbjct 164669800 GACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAAGACGCGGGACTCGT- 164669858 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||||||| | | ||| | | |||||||| || |||||||||||||| || Sbjct 164669859 --CCAGCTTGCCGCGGAGGATGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCC 164669913 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| || Sbjct 164669914 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTCTT 164669973 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064 |||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || | Sbjct 164669974 GAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGG 164670032 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 | |||| | ||| | || ||| | | | | | |||| | ||||| || Sbjct 164670033 CGACGATGCGCTCCGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGCGCCCAGTCG 164670088 Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||| ||||| ||||||| ||| |||| |||| || | | ||||| ||| Sbjct 164670089 GCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 164670144 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | || ||| || | || ||| |||||||| || | ||| | || || Sbjct 164670145 GACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTTCTC 164670204 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | ||||| |||||| || |||| Sbjct 164670205 GATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACATGAA 164670264 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| | || || | || | ||||| | ||| || ||||| || | |||||| Sbjct 164670265 CCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTG 164670324 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||||| || | |||||| ||| ||| || | |||||||| | |||| || Sbjct 164670325 GGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCCAGTGGCGCGCGTCGGAGGA 164670384 Query 160420 CAAATCAACCTCTTCCGCGCTCCA 160443 | || ||||| || ||| |||| Sbjct 164670385 GAGGTCCACCTCCTCGGCGGTCCA 164670408 >seq10 Length=712180895 Score = 109 bits (120), Expect = 9e-19 Identities = 233/343 (68%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| | |||||||||||||| || || || ||||| | ||||||||| Sbjct 262131699 CTTCTCGAATATGTTGGTCTTGCCCTGCAGGGG-ATGAGCTCCATCCAGTTGAATGGGTT 262131641 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | | | || ||||| |||| | ||| |||| ||||| || || || || Sbjct 262131640 GGTGGCATTGTACAGCTTCTTGCATCCCAACGCCATGAGCAGGCTGTCGGCAACGAACTC 262131581 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || ||| || || | ||| ||||||||| || | Sbjct 262131580 GATGTACTGGCTCATGAGGTCGTCGTTCATGCCGACGAGCGCGCAGGGGAGCGCATCACA 262131521 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||||| |||| || || || || |||| ||| |||| | ||| | | || Sbjct 262131520 GACAAACTCCCTCTCGATATCCACGGCCTCGGACACGATCTTGAAAACA---TAGGACTT 262131464 Query 159889 --CG-GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||||||| | | || ||| | | |||||||| || ||||||||||| || || Sbjct 262131463 GTCGAGCTTGCCGCAGAGGTTGTCAT---AGAGGAGGCATGCGAAGTCGCAGTGTAGACC 262131407 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||||| || ||||||| || |||||| | | ||| ||||||| Sbjct 262131406 CTCGTCTCGGGAGATGAGCTAGTTGGAGAAGGTGACGCCCGGC 262131364 >seq1 Length=593586810 Score = 89.7 bits (98), Expect = 8e-13 Identities = 130/180 (72%), Gaps = 13/180 (7%) Strand=Plus/Plus Query 159814 GGGGAGCGCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC 159871 ||||||||| || ||||| |||||| |||| || || || || |||| ||||||| Sbjct 278696820 GGGGAGCGCATC--ACAGATGAACTCCCTCTCGATATCCACGGCCTCGGAGACAATCTCG 278696877 Query 159872 GAGACACG---TTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCA 159928 |||| || || || | |||||| || | | ||| | | |||||||| || Sbjct 278696878 AAGACGCGGGATTTGT---CGAGCTTGCTGAAGAGGATGTCGT---AGAGGAGGCAGGCG 278696931 Query 159929 AAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||||| |||||| ||||| || || ||||||| ||||||||| | ||||||||||| Sbjct 278696932 AAGTCGTAGTGCATACCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGC 278696991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793672891555040