Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq129631 194 2e-44 >seq129631 Length=630463 Score = 194 bits (214), Expect = 2e-44 Identities = 315/451 (70%), Gaps = 2/451 (0%) Strand=Plus/Plus Query 41061 TTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTA 41120 |||||||| ||||||||| | ||| | |||||||| || || |||||| | || ||| Sbjct 522182 TTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTA 522241 Query 41121 CGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGT 41180 | || || || || || || |||||| ||||||||| | ||| | | Sbjct 522242 AGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAAC 522301 Query 41181 TCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGG 41240 ||| |||| ||| ||| ||| || || || ||| |||| ||||| || || || || Sbjct 522302 TCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGC 522361 Query 41241 GTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCAT 41300 ||||||| || || ||||| || | || | ||| | ||| ||||| ||||| Sbjct 522362 ATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCAT 522421 Query 41301 ACTGG-TGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGG 41359 || || ||| |||||||| | ||||| |||||| ||| || ||||| ||||| || || Sbjct 522422 ACCGGATGT-ATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGG 522480 Query 41360 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 41419 ||| ||| | || || || ||||| | | ||| || | |||||||| ||| ||||||| Sbjct 522481 TGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAA 522540 Query 41420 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 41479 | | || || || || || | ||| | |||||||| | || |||||||||||||| Sbjct 522541 TTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTA 522600 Query 41480 CGGTGTACAGCTTAACCAGTTGATGTATAAA 41510 | |||||| |||| | || |||||| || Sbjct 522601 TGCTGTACAAATTAATAAATTAATGTATCAA 522631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 213/317 (67%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 42256 ATTGGGAATGGTTACGTAGCCAGATTAAGAAATACGGCTTGCGCAACTCTACTCTTTCTG 42315 ||||| | | ||||| | | ||||| ||||| || || | || || ||| | |||| Sbjct 523389 ATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGAAATTCCACTTTATCTG 523448 Query 42316 CTTTAATGCCTTGTGAAAGTAGTTCACAGGTTAGTAACTCTACCAACGGGATCGAACCTC 42375 |||||||||||| |||| | ||| || | ||| |||| || || || ||||||| Sbjct 523449 CTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACTAATGGTATTGAACCTC 523508 Query 42376 CGCGCGGTTTAGTGAGTATCAAATCTTCGAAAGAAGG-ACACTATAACCAGGTTGTGCCT 42434 | | ||||| || ||||| ||| |||| ||||| || | || | || || || || Sbjct 523509 CAAGAGGTTTTGTCAGTATAAAAGCTTCTAAAGATGGAATGCTGCGA-CAAGTGGTTCCA 523567 Query 42435 AACCAGAATAACCAGATTGATTTCTATGATCTGCTCTGGGATATGGCTAAACGCGGTAAC 42494 | | || || || || ||||| | || |||||||| | || ||| Sbjct 523568 GAATATAAAAAATTGAAATATGAATATGAATTACTTTGGGATATACCAAA------TAAT 523621 Query 42495 AAAGGGTATCTGTCTCATGTAGCAGTTATGCAGAAGTTTGTCGATCAGTCTATTTCTGCA 42554 | ||| || | | ||| ||| |||||||||||||| | ||||| |||||||| | Sbjct 523622 ACAGGATACTTAGAACTTGTGGCAATTATGCAGAAGTTTATTGATCAATCTATTTCAGTT 523681 Query 42555 AACACCAACTATGACCC 42571 ||||| || ||||| || Sbjct 523682 AACACTAATTATGATCC 523698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557026865077440