Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq129631 125 3e-23 seq9 95.1 5e-14 seq12 91.5 6e-13 seq13 89.7 2e-12 seq11 89.7 2e-12 seq6 89.7 2e-12 seq10 84.2 9e-11 seq8 84.2 9e-11 seq5 84.2 9e-11 seq1 84.2 9e-11 >seq129631 Length=630463 Score = 125 bits (138), Expect = 3e-23 Identities = 233/343 (68%), Gaps = 18/343 (5%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| |||| |||||| | || | || |||| | || ||||| ||||| Sbjct 551444 AAAATGAAAAAAACTGCAGAAGACTACTTAGGAGAATCAGTGAAAGAAGCAGTTATTACA 551503 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || ||||| |||||||| || | ||||||||||| ||||| || ||||| Sbjct 551504 GTTCCTGCCTATTTTAATGATGCTCAGAGACAAGCAACTAAGGATGCTGGTAGAATTGCA 551563 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || ||| | || |||||||||| ||||||||||| || || || || ||||| || Sbjct 551564 GGATTAGAAGTCAAAAGAATTATTAACGAACCTACAGCTGCAGCGCTTGCTTATGGTTTA 551623 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | || |||| || | | | || ||| ||||| ||||| |||||||| ||| Sbjct 551624 G----AT--AAAGGGGAAGGAAATAGAACTATAGCAGTATACGATTTAGGTGGAGGTACT 551677 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGG------------TATTTGAAGTAAAG 451561 ||||| ||| | || ||| || |||| | ||||||||| Sbjct 551678 TTTGATATATCTATTATTGAAATCGATGATGTTGACAAAGAAAAAACATTTGAAGTTCTT 551737 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 || || ||||| || || ||||| || || |||||| | |||| Sbjct 551738 GCTACTAATGGAGACACCCATCTTGGTGGAGAAGATTTCGATA 551780 Score = 111 bits (122), Expect = 6e-19 Identities = 282/427 (66%), Gaps = 18/427 (4%) Strand=Plus/Plus Query 451988 GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT 452047 || ||||| |||||||| |||||| ||||||||||||||||| || | | || | Sbjct 552173 GTTAATCCAGATGAAGCGGTTGCAGTTGGTGCTGCAGTTCAAGGAGGTGTACT------T 552226 Query 452048 TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 |||| |||| ||| |||| || | || | |||||||| || | || | ||| Sbjct 552227 TCAGGCGATG-----TTA-AAGATGTTTTATTGCTTGATGTAACTCCATTGTCATTAGGA 552280 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 |||| || || || || |||||| | || || | || |||||||| | Sbjct 552281 ATTGAGACTATGGGGGGTATAATGACTTCACTGATAAATAAAAACACAACTATTCCTACT 552340 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 ||| | |||||| ||| |||||| ||||| ||| | | |||||| || || | Sbjct 552341 AAACATAGTCAAGTTTTTTCAACAGCAGAAGATAATCAATCCGCTGTAACAATACATATT 552400 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 || |||| ||| | || ||| |||||| || ||||| |||||| ||| | Sbjct 552401 CTTCAAGGTGAAAGAAAAAGAGCACTAGATAACAAATCTCTAGGTCAATTTAATCT---A 552457 Query 452288 AAC---ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGAT 452344 || ||| || ||||| ||||| | ||||||||| |||| | |||| ||||| Sbjct 552458 GACGGAATTGAGCCAGCACCAAGAGGAACAGCACAAATTGAAGTTACATTTGATATTGAT 552517 Query 452345 GCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATT 452404 | ||||||| | |||| |||| || ||| | ||||||| | |||||||| Sbjct 552518 TCCGATGGTATATTACATGTATCTGCAAAAGATAAAAAAACTGGAAAGGAACAAAAAATT 552577 Query 452405 ACAATTA 452411 || |||| Sbjct 552578 ACTATTA 552584 >seq9 Length=700855599 Score = 95.1 bits (104), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||| || ||||| ||||||||| | || |||| ||||| || |||| Sbjct 644717966 ATGCTGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATG 644718025 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||||||| | ||||| | || || || || || || ||||||||||| Sbjct 644718026 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAA 644718085 Query 451440 TAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 | || ||||| || | ||| | || | | || || || | | | ||| Sbjct 644718086 TTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTC-GGTGAGAAGAACGTGCTTATCTTT 644718144 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555 || | ||||| || ||| |||| ||| | ||| | ||||| || || | ||||| Sbjct 644718145 GACCTCGGTGGTGGCACTTTTGATGTCTCTCTCCTTACCATTGAGGAGGGTATTTTTGAG 644718204 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || |||||| ||||| || || || || || |||| || Sbjct 644718205 GTCAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAA 644718254 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| |||| | | || Sbjct 473210097 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCAGTCTCCAAGGCT 473210038 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||||||||| || || || || || || ||||| || Sbjct 473210037 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACCAAGGATGCTGGT 473209978 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| ||||| || || || || ||||| | Sbjct 473209977 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCCGCAGCTCTGTCG 473209918 Query 451445 TATGGA 451450 |||||| Sbjct 473209917 TATGGA 473209912 >seq12 Length=703217322 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || | ||||| || || ||||||||||| || || || Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||| || || || ||||| ||||||||||||||||| Sbjct 511296425 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 511296366 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || ||||||| || || || ||||| | || ||||| |||||||| Sbjct 511296365 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 511296306 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 511296305 ATCCAAAAAGAATCCACTCTTCA 511296283 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||||| ||||| || || || |||||||| || || || Sbjct 511296713 ATGCAGATATTTGTCAAGACACTAACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTCC 511296654 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || ||||||||||| || || ||||| || Sbjct 511296653 GACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCAG 511296594 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || || ||||| | || ||||||||||| ||| Sbjct 511296593 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGTACATTGGCGGATTACAAT 511296534 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 511296533 ATCCAGAAGGAGTCTACTCTTCACTTGGT 511296505 >seq13 Length=727576108 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || | || ||||| || || || || ||||| ||||| |||||| Sbjct 657437870 ATGCAGATCTTTGTGAAGATCCTCACTGGCAAGACCATCACACTTGAGGTTGAGTCATCT 657437929 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || |||| || ||||||||||| |||| || || ||||| Sbjct 657437930 GACACGATCGACAATGTCAAGGAAAAGATACAAGATAAGGAGGGAAACCCACCAGATCAG 657437989 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || || || || || |||| | || ||||| ||| Sbjct 657437990 CAGCGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGGCGAACACTTGCTGATTACAAT 657438049 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || || ||||| | || || ||||| || Sbjct 657438050 ATCGAGAAGGAATCCACCCTCCACTTGGT 657438078 >seq11 Length=621432051 Score = 89.7 bits (98), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||| || || ||| | ||||| || || || |||||||| || || || || | | Sbjct 492790487 ATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCCGACACC 492790428 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| | | || || || || || ||||| ||||||||||| ||||| || | Sbjct 492790427 ATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGG 492790368 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || ||||||| ||||| || ||||| | || ||||| |||||||| || | Sbjct 492790367 CTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAA 492790308 Query 391236 AAGGATGCAACACTTCA 391252 || || | || ||||| Sbjct 492790307 AAAGAATCCACTCTTCA 492790291 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || || ||||| ||||| ||||| ||| Sbjct 492790721 ATGCAGATCTTTGTCAAAACGCTAACCGGGAAGACCATTACACTTGAGGTTGAGAGCTCT 492790662 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | | || || || ||||||||||| || || ||||| || Sbjct 492790661 GACACCATTGATAATGTGGAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCAG 492790602 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || || || || | || ||||||||||| ||| Sbjct 492790601 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGGCGTACGTTGGCGGATTACAAT 492790542 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 492790541 ATCTAGAAGGAGTCTACTCTTCACTTGGT 492790513 >seq6 Length=841096276 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 549068682 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 549068623 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 549068622 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTG 549068563 Query 451442 GCATATGGA 451450 | |||||| Sbjct 549068562 TCTTATGGA 549068554 >seq10 Length=712180895 Score = 84.2 bits (92), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| | || | | || Sbjct 460448125 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCT 460448066 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||||||||| || || || || || || ||||| || Sbjct 460448065 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACCAAGGATGCTGGT 460448006 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| ||||| || || || || ||||| | Sbjct 460448005 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTGTCG 460447946 Query 451445 TATGGA 451450 |||||| Sbjct 460447945 TATGGA 460447940 >seq8 Length=673896466 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 670853051 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 670853110 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 670853111 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 670853169 >seq5 Length=754274518 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 539607511 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 539607452 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | | || || || ||||| || || |||||||| Sbjct 539607451 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 539607392 Query 451442 GCATATGGA 451450 | |||||| Sbjct 539607391 TCTTATGGA 539607383 >seq1 Length=593586810 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 492971125 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 492971066 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 492971065 GGCCGTATTGCTGGGCTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 492971007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971943238030472