Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 125 3e-23
seq9 95.1 5e-14
seq12 91.5 6e-13
seq13 89.7 2e-12
seq11 89.7 2e-12
seq6 89.7 2e-12
seq10 84.2 9e-11
seq8 84.2 9e-11
seq5 84.2 9e-11
seq1 84.2 9e-11
>seq129631
Length=630463
Score = 125 bits (138), Expect = 3e-23
Identities = 233/343 (68%), Gaps = 18/343 (5%)
Strand=Plus/Plus
Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333
||||||||| |||| |||||| | || | || |||| | || ||||| |||||
Sbjct 551444 AAAATGAAAAAAACTGCAGAAGACTACTTAGGAGAATCAGTGAAAGAAGCAGTTATTACA 551503
Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393
||||| || ||||| |||||||| || | ||||||||||| ||||| || |||||
Sbjct 551504 GTTCCTGCCTATTTTAATGATGCTCAGAGACAAGCAACTAAGGATGCTGGTAGAATTGCA 551563
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453
|| ||| | || |||||||||| ||||||||||| || || || || ||||| ||
Sbjct 551564 GGATTAGAAGTCAAAAGAATTATTAACGAACCTACAGCTGCAGCGCTTGCTTATGGTTTA 551623
Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
| || |||| || | | | || ||| ||||| ||||| |||||||| |||
Sbjct 551624 G----AT--AAAGGGGAAGGAAATAGAACTATAGCAGTATACGATTTAGGTGGAGGTACT 551677
Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGG------------TATTTGAAGTAAAG 451561
||||| ||| | || ||| || |||| | |||||||||
Sbjct 551678 TTTGATATATCTATTATTGAAATCGATGATGTTGACAAAGAAAAAACATTTGAAGTTCTT 551737
Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
|| || ||||| || || ||||| || || |||||| | ||||
Sbjct 551738 GCTACTAATGGAGACACCCATCTTGGTGGAGAAGATTTCGATA 551780
Score = 111 bits (122), Expect = 6e-19
Identities = 282/427 (66%), Gaps = 18/427 (4%)
Strand=Plus/Plus
Query 451988 GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT 452047
|| ||||| |||||||| |||||| ||||||||||||||||| || | | || |
Sbjct 552173 GTTAATCCAGATGAAGCGGTTGCAGTTGGTGCTGCAGTTCAAGGAGGTGTACT------T 552226
Query 452048 TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107
|||| |||| ||| |||| || | || | |||||||| || | || | |||
Sbjct 552227 TCAGGCGATG-----TTA-AAGATGTTTTATTGCTTGATGTAACTCCATTGTCATTAGGA 552280
Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167
|||| || || || || |||||| | || || | || |||||||| |
Sbjct 552281 ATTGAGACTATGGGGGGTATAATGACTTCACTGATAAATAAAAACACAACTATTCCTACT 552340
Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227
||| | |||||| ||| |||||| ||||| ||| | | |||||| || || |
Sbjct 552341 AAACATAGTCAAGTTTTTTCAACAGCAGAAGATAATCAATCCGCTGTAACAATACATATT 552400
Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287
|| |||| ||| | || ||| |||||| || ||||| |||||| ||| |
Sbjct 552401 CTTCAAGGTGAAAGAAAAAGAGCACTAGATAACAAATCTCTAGGTCAATTTAATCT---A 552457
Query 452288 AAC---ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGAT 452344
|| ||| || ||||| ||||| | ||||||||| |||| | |||| |||||
Sbjct 552458 GACGGAATTGAGCCAGCACCAAGAGGAACAGCACAAATTGAAGTTACATTTGATATTGAT 552517
Query 452345 GCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATT 452404
| ||||||| | |||| |||| || ||| | ||||||| | ||||||||
Sbjct 552518 TCCGATGGTATATTACATGTATCTGCAAAAGATAAAAAAACTGGAAAGGAACAAAAAATT 552577
Query 452405 ACAATTA 452411
|| ||||
Sbjct 552578 ACTATTA 552584
>seq9
Length=700855599
Score = 95.1 bits (104), Expect = 5e-14
Identities = 196/290 (68%), Gaps = 5/290 (2%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || | ||||| || ||||| ||||||||| | || |||| ||||| || ||||
Sbjct 644717966 ATGCTGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATG 644718025
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || |||||||||| | ||||| | || || || || || || |||||||||||
Sbjct 644718026 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAA 644718085
Query 451440 TAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495
| || ||||| || | ||| | || | | || || || | | | |||
Sbjct 644718086 TTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTC-GGTGAGAAGAACGTGCTTATCTTT 644718144
Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555
|| | ||||| || ||| |||| ||| | ||| | ||||| || || | |||||
Sbjct 644718145 GACCTCGGTGGTGGCACTTTTGATGTCTCTCTCCTTACCATTGAGGAGGGTATTTTTGAG 644718204
Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| ||||| || |||||| ||||| || || || || || |||| ||
Sbjct 644718205 GTCAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAA 644718254
Score = 87.8 bits (96), Expect = 7e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324
|||||||| || ||||| ||||| ||||| || |||| |||| | | ||
Sbjct 473210097 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCAGTCTCCAAGGCT 473210038
Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| ||||| || || ||||||||||||||||| || || || || || || ||||| ||
Sbjct 473210037 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACCAAGGATGCTGGT 473209978
Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444
|||||||| || | || | | ||||| ||||| || || || || ||||| |
Sbjct 473209977 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCCGCAGCTCTGTCG 473209918
Query 451445 TATGGA 451450
||||||
Sbjct 473209917 TATGGA 473209912
>seq12
Length=703217322
Score = 91.5 bits (100), Expect = 6e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || || | ||||| || || ||||||||||| || || ||
Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || ||| || || || ||||| |||||||||||||||||
Sbjct 511296425 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 511296366
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || ||||||| || || || ||||| | || ||||| ||||||||
Sbjct 511296365 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 511296306
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
|| | || || | || |||||
Sbjct 511296305 ATCCAAAAAGAATCCACTCTTCA 511296283
Score = 89.7 bits (98), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || ||||| ||||| || || || |||||||| || || ||
Sbjct 511296713 ATGCAGATATTTGTCAAGACACTAACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTCC 511296654
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | || || || || ||||||||||| || || ||||| ||
Sbjct 511296653 GACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCAG 511296594
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || | || || || || || ||||| | || ||||||||||| |||
Sbjct 511296593 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGTACATTGGCGGATTACAAT 511296534
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || |||||||| ||
Sbjct 511296533 ATCCAGAAGGAGTCTACTCTTCACTTGGT 511296505
>seq13
Length=727576108
Score = 89.7 bits (98), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || | || ||||| || || || || ||||| ||||| ||||||
Sbjct 657437870 ATGCAGATCTTTGTGAAGATCCTCACTGGCAAGACCATCACACTTGAGGTTGAGTCATCT 657437929
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || | | || |||| || ||||||||||| |||| || || |||||
Sbjct 657437930 GACACGATCGACAATGTCAAGGAAAAGATACAAGATAAGGAGGGAAACCCACCAGATCAG 657437989
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || | || || | || || || || || || || |||| | || ||||| |||
Sbjct 657437990 CAGCGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGGCGAACACTTGCTGATTACAAT 657438049
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| || ||||| | || || ||||| ||
Sbjct 657438050 ATCGAGAAGGAATCCACCCTCCACTTGGT 657438078
>seq11
Length=621432051
Score = 89.7 bits (98), Expect = 2e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
||||| || || ||| | ||||| || || || |||||||| || || || || | |
Sbjct 492790487 ATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCCGACACC 492790428
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
||||| | | || || || || || ||||| ||||||||||| ||||| || |
Sbjct 492790427 ATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGAGG 492790368
Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235
| || || ||||||| ||||| || ||||| | || ||||| |||||||| || |
Sbjct 492790367 CTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAACATCCAA 492790308
Query 391236 AAGGATGCAACACTTCA 391252
|| || | || |||||
Sbjct 492790307 AAAGAATCCACTCTTCA 492790291
Score = 84.2 bits (92), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || ||||| || || || || || ||||| ||||| ||||| |||
Sbjct 492790721 ATGCAGATCTTTGTCAAAACGCTAACCGGGAAGACCATTACACTTGAGGTTGAGAGCTCT 492790662
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | | || || || ||||||||||| || || ||||| ||
Sbjct 492790661 GACACCATTGATAATGTGGAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCAG 492790602
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || | || || || || || || || | || ||||||||||| |||
Sbjct 492790601 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGGCGTACGTTGGCGGATTACAAT 492790542
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || |||||||| ||
Sbjct 492790541 ATCTAGAAGGAGTCTACTCTTCACTTGGT 492790513
>seq6
Length=841096276
Score = 89.7 bits (98), Expect = 2e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || || ||||| ||||| ||||||||||| || ||||| ||||| || |||||
Sbjct 549068682 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 549068623
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | |||||||| | |||| | | || || |||||||| || || ||||||||
Sbjct 549068622 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTG 549068563
Query 451442 GCATATGGA 451450
| ||||||
Sbjct 549068562 TCTTATGGA 549068554
>seq10
Length=712180895
Score = 84.2 bits (92), Expect = 9e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324
|||||||| || ||||| ||||| ||||| || |||| | || | | ||
Sbjct 460448125 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCT 460448066
Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| ||||| || || ||||||||||||||||| || || || || || || ||||| ||
Sbjct 460448065 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACCAAGGATGCTGGT 460448006
Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444
|||||||| || | || | | ||||| ||||| || || || || ||||| |
Sbjct 460448005 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTGTCG 460447946
Query 451445 TATGGA 451450
||||||
Sbjct 460447945 TATGGA 460447940
>seq8
Length=673896466
Score = 84.2 bits (92), Expect = 9e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || ||||| ||||| ||||| ||||||||||| || |||| || || || |||||
Sbjct 670853051 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 670853110
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440
|| | ||||||||| | |||| | | || || |||||||| || || ||||||||
Sbjct 670853111 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 670853169
>seq5
Length=754274518
Score = 84.2 bits (92), Expect = 9e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || || ||||| ||||| ||||||||||| || ||||| ||||| || |||||
Sbjct 539607511 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 539607452
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | |||||||| | |||| | | || || || ||||| || || ||||||||
Sbjct 539607451 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 539607392
Query 451442 GCATATGGA 451450
| ||||||
Sbjct 539607391 TCTTATGGA 539607383
>seq1
Length=593586810
Score = 84.2 bits (92), Expect = 9e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || ||||| ||||| ||||| ||||||||||| || |||| || || || |||||
Sbjct 492971125 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 492971066
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440
|| | ||||||||| | |||| | | || || |||||||| || || ||||||||
Sbjct 492971065 GGCCGTATTGCTGGGCTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 492971007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1971943238030472
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