Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq129631 132 5e-26 >seq129631 Length=630463 Score = 132 bits (146), Expect = 5e-26 Identities = 296/442 (67%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 141449 TAACTCATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTT 141508 ||| | ||| ||||| | ||||||| | ||||| | | |||||||||| ||| | Sbjct 522622 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 522563 Query 141509 GTTGTTCTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGT 141568 || || || || || | || ||||| | ||| || ||||| || ||| | || | || Sbjct 522562 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 522503 Query 141569 TGCCGAACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTT 141628 ||| | ||| | || |||||||||||||| | | || || | ||||| || Sbjct 522502 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTT 522443 Query 141629 CCAGAAAGGTACTACG-CCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAG 141687 | ||||| | ||| || || || |||| || | || ||| || Sbjct 522442 ATAAAAAGGAA-TACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAG 522384 Query 141688 CTCGAATCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAG 141747 ||||||| || |||||||| || || |||||||| | ||||||||| || ||||| | Sbjct 522383 CTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTG 522324 Query 141748 CAGAGTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAAC 141807 || ||| | |||| || |||| | | || || ||||||| | ||||| |||| Sbjct 522323 CACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAAC 522264 Query 141808 TGAATTGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTAC 141867 | |||||||||||||| || | || || | |||||| || || || | || |||||| Sbjct 522263 TAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAA 522204 Query 141868 GAGTTGAAACAGCTTCATAAAA 141889 ||| |||| || | |||||| Sbjct 522203 AAGTGGAAATTGCATTATAAAA 522182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523990964795920