Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014663.1 Length=169947 Score E Sequences producing significant alignments: (Bits) Value seq129631 143 3e-29 >seq129631 Length=630463 Score = 143 bits (158), Expect = 3e-29 Identities = 516/795 (65%), Gaps = 24/795 (3%) Strand=Plus/Minus Query 147764 CATAGTCCATGTGACGGATACGGTTTTCTTCAATACCTTTGTTGTTCTTGAGAACCATCA 147823 |||| || | ||||| | | ||||||||||| ||| | || || || | ||| | | Sbjct 522602 CATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 522543 Query 147824 AGTTCTCACATTCAAGGTGCCAAATCGGCCAGTAGCAAGTTGCCGAACCTTTACGAATAC 147883 | || ||| ||| || ||||| || || | | |||||| | ||| | || | Sbjct 522542 AATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTC 522483 Query 147884 CACCCTGTGAACAAGAGTGTACAGCAGCATTTTTAAGT--TTCCAGAATGGTGTAACACC 147941 |||| || |||||||| | ||| || || ||| |||| || | || || || || Sbjct 522482 CACCTTGAGAACAAGATTTTACTGC-GC-TTTGGAAGTGTTTATAAAAAGGAATACATCC 522425 Query 147942 GGTGTGCTTAACTTCACCAGGACCAATCTTAGAACCTTCAGCTCGGATTGCTCCTCCACT 148001 ||| || |||| ||| | || | ||| |||||| ||| || | | Sbjct 522424 GGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTT 522365 Query 148002 GATGCCAATACCTGCTCGTTTAGACACATATTTTACAATAGCTGATGTGGTTTCAGTAAT 148061 ||||| || |||||||||| ||| |||||||||||||| || || || || |||| Sbjct 522364 AATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAAT 522305 Query 148062 TGATTCTAAATCGTCGCCAGTTTCAATCAATACACACGAACTGAATTGACGTGTTGGAGT 148121 || | ||||| || || |||||| || ||||| ||||| |||||||| ||||| || Sbjct 522304 AGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGT 522245 Query 148122 CCGGACACCTGCAAGAATAGGAGTTGGCAAACTAATTTTGAATTGCGATGCAGCATCATA 148181 | || |||| | ||| || || || | | ||||| || || |||| ||| Sbjct 522244 TCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATA 522185 Query 148182 AAAATCTTTGATGTATTGCAAACGTTTTGCTGGGTTTTCGT-TTTGG--TGTAAGCACAT 148238 ||| | || || | || ||| | | ||||||| ||| | |||||| Sbjct 522184 AAAGCGCTGAATATAATTCATACGAATATTT---TTTTCGTATTTAGAAAATAAGCATGC 522128 Query 148239 ACCAATGAGCATGTACAAGAACTGCGGAGTTTCAAAAATTTCACCAGATGAGCGATCTTT 148298 | || | || || || || || | | ||||| | ||||| |||| |||| || Sbjct 522127 AGATATTAAAATATATAAAAATTGTGCACTTTCATATATTTCTCCAGTAACACGATTTTG 522068 Query 148299 TACAAGATACTTATCTTTCATTTGCATTGTAC--CGGCATAGGTGAAATTGAAGTCGCGA 148356 || | |||||| ||| | ||| || ||| | ||||| | ||||| | ||| || Sbjct 522067 TAATAAATACTTTCCTTCTAATTG--TTTTACTGCTGCATAAGAAAAATTCATGTCACGC 522010 Query 148357 TCATGATCAATCATTGCATTCAATGCATCAAATTCTTCACGAGTATAACGTT-CAATAAT 148415 |||||| || | || ||||| | | || |||||| | || |||| || |||||| Sbjct 522009 CAATGATCGATAAATGAATTCATTTCTACATATTCTTTAAAAGAATAATTTTGTAATAAT 521950 Query 148416 TTCTGGGTCATAGATTCCTACAT----CAGTTTTTGCGACGACATGATCATACAAATGAG 148471 || | |||||| |||||| || || ||||| ||||||| ||||| | || Sbjct 521949 TT-TTCGTCATATTTTCCTAAATTGACCATTTTTT----TTACATGATGATACAGAATAG 521895 Query 148472 GTGGATCGAATTGCCCATAGACTTCTTTGCGAAGACCGAATTGTGCAAGATTAGATGCAA 148531 |||| || ||||| || || ||| ||| | |||| || ||||| | | ||| | Sbjct 521894 GTGGTTCAAATTGACCGTAAGCTTTTTTCCTAAGATGAAAAATAGCAAGTCTTGCTGCCA 521835 Query 148532 CGTATTGATAATCAG 148546 ||||||||||||| Sbjct 521834 TATATTGATAATCAG 521820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542688843578480