Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14 141 1e-28 seq13 141 1e-28 >seq14 Length=755408349 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 132512715 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTT 132512656 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 132512655 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 132512596 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 132512595 GCTCATCTCCCGCGACGAGGGCCTGCAC 132512568 Score = 116 bits (128), Expect = 5e-21 Identities = 202/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| || || || | | ||||||||||||||||| |||| |||||| || | | Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 16061 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 16119 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 646004037 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 646004036 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| || || ||||| || || | ||| | || || ||| Sbjct 733682206 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 733682147 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || || |||||||| || | ||||||| Sbjct 733682146 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 733682089 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 733682088 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 733682031 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 733682030 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 733681975 Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 733681974 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 733681917 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 733681916 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 733681857 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 733681856 CTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 733681803 >seq13 Length=727576108 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 164670052 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 164669993 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 164669992 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 164669933 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 164669932 GCTCATCTCCCGCGACGAGGGCCTGCAC 164669905 Score = 116 bits (128), Expect = 5e-21 Identities = 202/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| || || || | | ||||||||||||||||| |||| ||||| || | | Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 16061 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 16119 || |||||||| ||||||| ||| || ||||| || ||| || | | | |||| | Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 662716235 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 662716234 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| || || ||||| || || | ||| | || || ||| Sbjct 715483586 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 715483527 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || || |||||||| || | ||||||| Sbjct 715483526 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 715483469 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 715483468 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 715483411 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 715483410 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 715483355 Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 715483354 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 715483297 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 715483296 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 715483237 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 715483236 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 715483183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619585227536480