Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq13 127 2e-24 seq11 87.8 2e-12 seq6 84.2 3e-11 seq5 84.2 3e-11 seq12 82.4 9e-11 >seq14 Length=755408349 Score = 127 bits (140), Expect = 2e-24 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| |||||||| || ||||| || | ||||||||| Sbjct 733682117 GAAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTT------ 733682064 Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | ||||| | ||| ||||| | | ||||| |||||||||||||||||||| || Sbjct 733682063 CCCCCCACCCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGAC 733682004 Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765 ||| || || ||||| |||| ||||| || || | || | ||| || || Sbjct 733682003 GATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGAC 733681944 Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 || ||||| | ||| ||||| | | || | || | |||||| || | ||| Sbjct 733681943 GCCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTC 733681884 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || |||| ||| || ||||| || ||||| || || || || | || |||| ||| Sbjct 733681883 CCCGGCGACGGCCCGGGCGAGCAGCGTCTTGCCGGTCCCGGGCGGGCCGACGAGCAGGCA 733681824 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| |||||||||||| || | ||| || || ||||||||||| ||||| Sbjct 733681823 GCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCAC 733681764 Query 11946 AATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 733681763 CACCTCCTGCAGCTCGAGCTTGGC 733681740 Score = 125 bits (138), Expect = 8e-24 Identities = 321/478 (67%), Gaps = 22/478 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 111022830 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 111022889 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | || | |||||||||||| || ||||| |||||||| Sbjct 111022890 GCGATGACGATGACGCCGCTGTCGCCGCGGAAACCGTCCATCTCGGTGAGCAGCTGGTTC 111022949 Query 11623 ATCGTCTGTTCACGCTCATCGTTG---GAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| | ||||| | ||||| |||| | ||| Sbjct 111022950 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATACC-CGTGCCG--CGCTGCCGGCCG 111023006 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| | || | |||| | ||| Sbjct 111023007 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGCTGTCCTTGGCCTTGTTGAAG 111023066 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || ||| ||| || || || ||||||||||| | ||| | | | | | Sbjct 111023067 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGA 111023125 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || | |||||| || | ||| || ||||| || || || || ||||| || Sbjct 111023126 CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCC 111023185 Query 11859 CGTACCAGGTG----CACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCC- 11912 ||| || || | ||||||| |||| | || | |||||| || | | |||| || Sbjct 111023186 CGTCCCCGGCGGGCCCACCAGC-AGAA---CCCCCCTGGGGATCCTCGCCCCCACCGCCG 111023241 Query 11913 -AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | | || || ||||||||| | ||| ||||||| | |||| ||| || Sbjct 111023242 TGAACTTG---TCCGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGC 111023296 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 132512569 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 132512628 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || ||||||||||||||||| ||| Sbjct 132512629 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCAG 132512688 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | || || ||||| ||| || ||||| Sbjct 132512689 GCGAAGGCGACGATGCGCTCGGCGAAGCGCTCCCCAC-CGTCGATCCAGCGCAGGGCCCA 132512747 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 132512748 GTCGGCCTTGCG 132512759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| ||||||||||| || |||||||||||||| || || || |||||| Sbjct 35285472 GTATATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTGGA 35285531 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||| ||||||| |||||| ||||| Sbjct 35285532 AGCAGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 35285566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| |||||| ||||| || ||||||||||||| || || || |||||| Sbjct 35266093 GTATATGTTAGACGTGTATGGTTCAAAGTACTCATTGTTGCCAAGAATCTGACTAGTGGA 35266152 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 ||| |||||||| ||||||| ||| || |||||| Sbjct 35266153 AGCAGTGGGCATTGGAGCCACCAGACGAGAGTTTCG 35266188 >seq13 Length=727576108 Score = 127 bits (140), Expect = 2e-24 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| |||||||| || ||||| || | ||||||||| Sbjct 715483497 GAAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTT------ 715483444 Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | ||||| | ||| ||||| | | ||||| |||||||||||||||||||| || Sbjct 715483443 CCCCCCACCCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGAC 715483384 Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765 ||| || || ||||| |||| ||||| || || | || | ||| || || Sbjct 715483383 GATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGAC 715483324 Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 || ||||| | ||| ||||| | | || | || | |||||| || | ||| Sbjct 715483323 GCCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTC 715483264 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || |||| ||| || ||||| || ||||| || || || || | || |||| ||| Sbjct 715483263 CCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCA 715483204 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| |||||||||||| || | ||| || || ||||||||||| ||||| Sbjct 715483203 GCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCAC 715483144 Query 11946 AATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 715483143 GACCTCCTGCAGCTCGAGCTTGGC 715483120 Score = 113 bits (124), Expect = 5e-20 Identities = 200/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 142204107 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 142204048 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | || | ||| |||||||| || ||||| |||||||| Sbjct 142204047 GCGATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 142203988 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| || || || | ||||| |||| | ||| Sbjct 142203987 AGCGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCG 142203931 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 142203930 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 142203871 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 || || || || ||| ||| || || || ||||||||||| | ||| Sbjct 142203870 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAA 142203824 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| ||||||||||| || |||||||||||||| || || || |||||| Sbjct 79582373 GTATATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTGGA 79582432 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 |||||||||||| ||||||| |||||| ||||| Sbjct 79582433 AGCTGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 79582467 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 164669906 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 164669965 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 164669966 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 164670025 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | || | ||||| ||| ||| ||||| Sbjct 164670026 GCGAAGGCGACGATGCGCTCCGCGAAGCGCTCCCCGC-CGTCGATCCAGCGGAGCGCCCA 164670084 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 164670085 GTCGGCCTTGCG 164670096 >seq11 Length=621432051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| | |||||| ||||| || |||||||||||||| || ||||| ||| || Sbjct 597003546 GTAAATGTTCGACGTGTATGGTTCAAAGCACTCATTGTTGCCAAGAATTTGACTAGTAGA 597003605 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||| |||||||| ||||||| |||||| Sbjct 597003606 AGCAGTGGGCATTGGAGCCACAAGAAGA 597003633 >seq6 Length=841096276 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 684358873 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 684358818 >seq5 Length=754274518 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 643366585 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 643366530 >seq12 Length=703217322 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| | |||||| ||||| || ||||||||||| || || ||||| ||| || Sbjct 667363920 GTAAATGTTCGACGTGTATGGTTCAAAGCACTCATTGTTACCAAGAATTTGACTAGTAGA 667363861 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||| |||||||| ||||||| |||||| Sbjct 667363860 AGCAGTGGGCATTGGAGCCACAAGAAGA 667363833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587878045665200