Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq14 118 1e-21
seq13 111 2e-19
seq12 98.7 1e-15
seq11 84.2 3e-11
>seq14
Length=755408349
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || ||||| || ||||| || || || || |||||| ||||| |||||||| ||
Sbjct 132512568 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 132512627
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| || || ||||||||||| |||||||| ||
Sbjct 132512628 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCA 132512687
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| || || | | |||||||||||||
Sbjct 132512688 GGCGAAGGCGACGATGCGCTCGGCGAAG 132512715
Score = 107 bits (118), Expect = 2e-18
Identities = 301/454 (66%), Gaps = 10/454 (2%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 733682206 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 733682147
Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 733682146 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 733682089
Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 733682088 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 733682031
Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427
||||| ||||||||||| |||||||| || || || || | ||| | || ||
Sbjct 733682030 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 733681971
Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487
||| || | ||||| ||||| || || || || | ||| || || | | ||||
Sbjct 733681970 GAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGACGCGGC 733681911
Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| || |||||| || | || || || | ||| |||||||| || ||||| ||
Sbjct 733681910 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTGCC 733681851
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGT 9606
|| || ||| || |||| | |||| ||| | || |||||||| || | ||
Sbjct 733681850 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCCGAGCGCGGTGT 733681792
Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
| | || || | |||||| |||||||| | |||
Sbjct 733681791 ACTTGTCGGGGTTCTTGAGGAAATCCACCACCTC 733681758
Score = 105 bits (116), Expect = 8e-18
Identities = 196/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209
Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314
| |||| || || || | ||||||||||||||||| |||| ||| || || | |
Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149
Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368
|| || |||| |||||| ||| | |||||| || || | |||| | ||
Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| |||||||| ||||||| || || || || || ||| || ||| | | |||
Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 646004035
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
||||| ||||| | ||| || |||||||||||||||||||| ||
Sbjct 646004034 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226
||| || || || || ||||||||||| |||||||| | || ||| | ||| | |||
Sbjct 35287896 CTGTGGCCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGTTG 35287955
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
|||||| | ||| || | | ||||||||||||| ||| ||| || || | |
Sbjct 35287956 GGACATGAGATGGTAAGTTCTGATGGCAGAATCAATGTCATCCTTGTGTATCCCTACTGA 35288015
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346
|| | ||| ||||||| || || |||||| || | ||| | ||| | || ||
Sbjct 35288016 AACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTA 35288075
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
| | |||| || || |||| ||| ||||| || ||||| ||||||
Sbjct 35288076 GGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 35288122
>seq13
Length=727576108
Score = 111 bits (122), Expect = 2e-19
Identities = 300/453 (66%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || || || |||||||| |||||||||||||| || | || ||| |||||
Sbjct 164669606 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 164669665
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 117104
|||| || || || | ||||| | | | ||| |||| | | ||| || ||
Sbjct 164669666 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 164669724
Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164
|| | || |||| ||||||| | ||| || |||||| |||| ||| ||
Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784
Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224
||||| ||||| ||| |||| | |||| || || || ||||| |||||| ||
Sbjct 164669785 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 164669844
Query 117225 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 117279
|| ||| | | | || | | ||| || | | | |||| ||| ||
Sbjct 164669845 GACG----CGGGACTCG-TCCAGCTTGCCGCGGAGGATGTCGTAGAGGAGGCAGGCGAAG 164669899
Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339
|| ||| || ||||| || ||||| || || || || |||||| ||||| ||||||
Sbjct 164669900 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 164669959
Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399
|| || |||||||| | ||| | || |||||||| || || ||||||||||| |||||
Sbjct 164669960 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 164670019
Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| || || || || | | |||||| ||||||
Sbjct 164670020 ACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052
Score = 107 bits (118), Expect = 2e-18
Identities = 301/454 (66%), Gaps = 10/454 (2%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 715483586 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 715483527
Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 715483526 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 715483469
Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 715483468 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 715483411
Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427
||||| ||||||||||| |||||||| || || || || | ||| | || ||
Sbjct 715483410 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 715483351
Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487
||| || | ||||| ||||| || || || || | ||| || || | | ||||
Sbjct 715483350 GAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGACGCGGC 715483291
Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| || |||||| || | || || || | ||| |||||||| || ||||| ||
Sbjct 715483290 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCC 715483231
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGT 9606
|| || ||| || |||| | |||| ||| | || |||||||| || | ||
Sbjct 715483230 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCCGAGCGCGGTGT 715483172
Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
| | || || | |||||| |||||||| | |||
Sbjct 715483171 ACTTGTCGGGGTTCTTGAGGAAATCCACGACCTC 715483138
Score = 105 bits (116), Expect = 8e-18
Identities = 196/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407
Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314
| |||| || || || | ||||||||||||||||| |||| || || || | |
Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347
Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368
|| || |||| |||||| ||| | |||||| || || | |||| | ||
Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| |||||||| ||||||| ||| || || || || ||| || ||| | | |||
Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 662716233
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
||||| ||||| | ||| || |||||||||||||||||||| ||
Sbjct 662716232 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 106246 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 106305
|||||||||||| || || || ||| || || | || ||||| || | |||
Sbjct 79582967 TGAATCAAATGCCATGCCAAGTAACATGAATGTGTCTGCCAAGCCCTGAACCCCAATACC 79583026
Query 106306 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365
||| || |||||||||||||||||| | | ||||| ||||| |||||| |||| | ||
Sbjct 79583027 AATTGGCCTGTGTCGCATATTAGACCTCCTTGCAGTTTCAACCGGATAATAATTCATATC 79583086
Query 106366 AATGACTCGGTTTAGATT 106383
||| | | |||||||||
Sbjct 79583087 AATTATTTTGTTTAGATT 79583104
>seq12
Length=703217322
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|| |||||||||| |||||| ||||| || ||||| | |||| |||| | || |||
Sbjct 667362637 GCAATTGATGCCAGATTGCACACAGCAGTTTCATCAGGACTTGTGAACTCAACTATCTCT 667362578
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581
|| |||||||||||| |||||| || |||| ||| | ||| ||||| ||| |||||||
Sbjct 667362577 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 667362519
>seq11
Length=621432051
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|| |||||||||| |||||| || || || ||| | |||| |||| | || |||
Sbjct 597004828 GCAATTGATGCCAGATTGCACACGGCAGTTTCAGTGGGACTTGTGAACTCAACTATCTCT 597004887
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581
|| |||||||||||| |||||| || |||| ||| | ||| ||||| ||| |||||||
Sbjct 597004888 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 597004946
Score = 82.4 bits (90), Expect = 9e-11
Identities = 155/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || ||||||||||| |||||||| | || ||| | ||| | |||
Sbjct 597006017 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGG 597006076
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| ||| |||||| | | |||| ||||| || ||| ||| || || | |
Sbjct 597006077 GACATCATGTGGTATGTTTTGACAGCAGACTCAATATCATCCTTGTGTATCCCAACAGAA 597006136
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTT--GAAGAT 107345
|| | ||| ||||| | ||| ||| |||||| | | ||| | | | || | ||||
Sbjct 597006137 ACCCTCATTAACATATGTTGTGGTCTTTCCACAACCTTCCCACCAA--CTTTCAGTAGAT 597006194
Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391
| | ||||||| || || | ||||||| || | | ||| ||||
Sbjct 597006195 AAGACCTCTCAAGCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTC 597006240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588880972542160
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