Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 118 1e-21 seq13 111 2e-19 seq12 98.7 1e-15 seq11 84.2 3e-11 >seq14 Length=755408349 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 132512568 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 132512627 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| |||||||| || Sbjct 132512628 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCA 132512687 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | | ||||||||||||| Sbjct 132512688 GGCGAAGGCGACGATGCGCTCGGCGAAG 132512715 Score = 107 bits (118), Expect = 2e-18 Identities = 301/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 733682206 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 733682147 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 733682146 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 733682089 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 733682088 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 733682031 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| ||||||||||| |||||||| || || || || | ||| | || || Sbjct 733682030 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 733681971 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| || | ||||| ||||| || || || || | ||| || || | | |||| Sbjct 733681970 GAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGACGCGGC 733681911 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || |||||| || | || || || | ||| |||||||| || ||||| || Sbjct 733681910 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTGCC 733681851 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGT 9606 || || ||| || |||| | |||| ||| | || |||||||| || | || Sbjct 733681850 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCCGAGCGCGGTGT 733681792 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | || || | |||||| |||||||| | ||| Sbjct 733681791 ACTTGTCGGGGTTCTTGAGGAAATCCACCACCTC 733681758 Score = 105 bits (116), Expect = 8e-18 Identities = 196/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| |||| ||| || || | | Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| |||||| ||| | |||||| || || | |||| | || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 646004035 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 646004034 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || || || || ||||||||||| |||||||| | || ||| | ||| | ||| Sbjct 35287896 CTGTGGCCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGTTG 35287955 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | ||| || | | ||||||||||||| ||| ||| || || | | Sbjct 35287956 GGACATGAGATGGTAAGTTCTGATGGCAGAATCAATGTCATCCTTGTGTATCCCTACTGA 35288015 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346 || | ||| ||||||| || || |||||| || | ||| | ||| | || || Sbjct 35288016 AACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTA 35288075 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | |||| || || |||| ||| ||||| || ||||| |||||| Sbjct 35288076 GGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 35288122 >seq13 Length=727576108 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || ||| ||||| Sbjct 164669606 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 164669665 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || || | ||||| | | | ||| |||| | | ||| || || Sbjct 164669666 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 164669724 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | || |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| ||||| ||| |||| | |||| || || || ||||| |||||| || Sbjct 164669785 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 164669844 Query 117225 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 117279 || ||| | | | || | | ||| || | | | |||| ||| || Sbjct 164669845 GACG----CGGGACTCG-TCCAGCTTGCCGCGGAGGATGTCGTAGAGGAGGCAGGCGAAG 164669899 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| || ||||| || ||||| || || || || |||||| ||||| |||||| Sbjct 164669900 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 164669959 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || |||||||| || || ||||||||||| ||||| Sbjct 164669960 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 164670019 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || || || | | |||||| |||||| Sbjct 164670020 ACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052 Score = 107 bits (118), Expect = 2e-18 Identities = 301/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 715483586 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 715483527 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 715483526 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 715483469 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 715483468 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 715483411 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| ||||||||||| |||||||| || || || || | ||| | || || Sbjct 715483410 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 715483351 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| || | ||||| ||||| || || || || | ||| || || | | |||| Sbjct 715483350 GAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGACGCGGC 715483291 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || |||||| || | || || || | ||| |||||||| || ||||| || Sbjct 715483290 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGTCTTCCC 715483231 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGT 9606 || || ||| || |||| | |||| ||| | || |||||||| || | || Sbjct 715483230 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCCGAGCGCGGTGT 715483172 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | || || | |||||| |||||||| | ||| Sbjct 715483171 ACTTGTCGGGGTTCTTGAGGAAATCCACGACCTC 715483138 Score = 105 bits (116), Expect = 8e-18 Identities = 196/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| |||||| ||| | |||||| || || | |||| | || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| ||| || || || || ||| || ||| | | ||| Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 662716233 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 662716232 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 106246 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 106305 |||||||||||| || || || ||| || || | || ||||| || | ||| Sbjct 79582967 TGAATCAAATGCCATGCCAAGTAACATGAATGTGTCTGCCAAGCCCTGAACCCCAATACC 79583026 Query 106306 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 ||| || |||||||||||||||||| | | ||||| ||||| |||||| |||| | || Sbjct 79583027 AATTGGCCTGTGTCGCATATTAGACCTCCTTGCAGTTTCAACCGGATAATAATTCATATC 79583086 Query 106366 AATGACTCGGTTTAGATT 106383 ||| | | ||||||||| Sbjct 79583087 AATTATTTTGTTTAGATT 79583104 >seq12 Length=703217322 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| ||||| || ||||| | |||| |||| | || ||| Sbjct 667362637 GCAATTGATGCCAGATTGCACACAGCAGTTTCATCAGGACTTGTGAACTCAACTATCTCT 667362578 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 667362577 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 667362519 >seq11 Length=621432051 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| || || || ||| | |||| |||| | || ||| Sbjct 597004828 GCAATTGATGCCAGATTGCACACGGCAGTTTCAGTGGGACTTGTGAACTCAACTATCTCT 597004887 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 597004888 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 597004946 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| |||||||| | || ||| | ||| | ||| Sbjct 597006017 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGG 597006076 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| |||||| | | |||| ||||| || ||| ||| || || | | Sbjct 597006077 GACATCATGTGGTATGTTTTGACAGCAGACTCAATATCATCCTTGTGTATCCCAACAGAA 597006136 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTT--GAAGAT 107345 || | ||| ||||| | ||| ||| |||||| | | ||| | | | || | |||| Sbjct 597006137 ACCCTCATTAACATATGTTGTGGTCTTTCCACAACCTTCCCACCAA--CTTTCAGTAGAT 597006194 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||| || || | ||||||| || | | ||| |||| Sbjct 597006195 AAGACCTCTCAAGCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTC 597006240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588880972542160