Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq129631 100 3e-16 >seq129631 Length=630463 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 137449 CCAATGCCCGCTCGTTTTGACACGTACGAAATAATAGCAGATGATGTTTCATTAATCGAG 137508 || || || ||||||| || || || | ||| ||| | ||| ||||||| ||| Sbjct 522360 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 522301 Query 137509 TCCAAGCTATCACCAGATTCAATCAGTACACAAGAACTAAATTGACGTGTTGGTGTACGT 137568 | || |||| || ||||||| | |||||||||||||||||||| |||||||| | | Sbjct 522300 TTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTT 522241 Query 137569 ACTCCGGCCATGATTGGAGTGGGTAGACTGATTTGCTTTAA----TGAAACTGCGTCATA 137624 ||||| | ||| || || ||||||||| ||| | ||||| |||| ||| | ||| Sbjct 522240 ACTCCTGACATAATCGGTGTGGGTAGA--GATAT--TTTAAAAGTGGAAATTGCATTATA 522185 Query 137625 AAAGTCTTTAACATATTGTAAACGTTTGCTTTTTTCGTCTT 137665 |||| | || ||| | | ||| | ||||||||| || Sbjct 522184 AAAGCGCTGAATATAATTCATACGAATATTTTTTTCGTATT 522144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510282168121040