Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq129631 127 3e-24 >seq129631 Length=630463 Score = 127 bits (140), Expect = 3e-24 Identities = 409/630 (65%), Gaps = 10/630 (2%) Strand=Plus/Minus Query 33121 AACTTGTTAATATGTACTGTATAATCAATATTACGAATACGGGTTTCTTCAGTACCTTTA 33180 || || ||||| ||||| | |||||||| || ||| | | |||||||| | ||| || Sbjct 522621 AATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTA 522562 Query 33181 TTATTTTTCAATACCAGAAGCTTTTCAACTTCCAAATGCCACATAGGATAGTTAATATTA 33240 |||||||| || || | | ||||||| ||| | |||||| || || || || | | Sbjct 522561 TTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTT 522502 Query 33241 CCACTACCNNNNNGAACACCACCTTGGCTACAGCTCTTAACACCGGTAGTAAAATGTTTC 33300 | || ||| |||||||| ||| || || || | || ||||| Sbjct 522501 GCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTA 522442 Query 33301 CAGAATGGAATGACCCCAGTGTGGGAAACTTCCCCCGAGCGGATACGAGATCCTTCAGCA 33360 | || ||||| || || || | |||| || | |||| || |||| ||| Sbjct 522441 TAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCT 522382 Query 33361 CGAATAGCACCACCATTAATACCAATACCGGCACGGCGGGAAATATATTTCATTATCGCT 33420 ||||| |||| | ||||| || || || || || | |||| |||||| | || || Sbjct 522381 CGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCA 522322 Query 33421 TTTGATGTTTCTCCGATAGATTCAAGAGAGTCACCGGATTCAATTTTAACGCATGAGCTA 33480 | | ||| | ||||| | | | || | |||||||| || || || ||| Sbjct 522321 CTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTA 522262 Query 33481 AATTGACGAGTTGGAGTTCTTACACCAGAAAGAATTGGTGTCGGTAGAGAAATTTCAAAA 33540 |||||||||||||| |||||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 522261 AATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAA 522202 Query 33541 TTACTAGCGGCATTATAAAAATCGAT-AACATATTCCAAACGTTTGGAAACGTCTTCTTC 33599 | | ||||||| |||| || | || ||| | || ||| | | | ||| | Sbjct 522201 GTGGAAATTGCATTAT-AAAAGCGCTGAATATAATTCATACGAAT---ATTTTTTTCGTA 522146 Query 33600 TTGATGAAGACA--CAT--AGCTTGTAACATATATGCAAACTGTGGAGTTTCATAAATTG 33655 || | ||| | | ||| || | ||| |||||| ||| |||| | ||||||| ||| Sbjct 522145 TTTA-GAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTTTCATATATTT 522087 Query 33656 TACCGTTAGAACGGTCTTTTACAAGATATTTTTCTTTATACTGCATAGCACCAGCATAAG 33715 || || ||| | || || | ||| ||| ||| | || | | | ||||||| Sbjct 522086 CTCCAGTAACACGATTTTGTAATAAATACTTTCCTTCTAATTGTTTTACTGCTGCATAAG 522027 Query 33716 TGAAATTCATATCTCGGGTGTGATCGATAA 33745 |||||||| || || |||||||||| Sbjct 522026 AAAAATTCATGTCACGCCAATGATCGATAA 521997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751201812946960