Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq12 95.1 1e-14
seq11 91.5 2e-13
>seq12
Length=703217322
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
||| || | ||| || | ||||| || |||||| ||||||| || || | || |
Sbjct 667361447 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 667361388
Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717
||||||| | | |||| || ||||| | ||| ||||| || | ||| || | |||||
Sbjct 667361387 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 667361329
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
|||||| ||| |||||||| |||| || | | ||||| ||||| || | || |
Sbjct 667361328 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 667361269
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
||| ||||||||||| | | ||| |||||| |||||| ||| ||
Sbjct 667361268 GTGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 667361220
>seq11
Length=621432051
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
||| || | ||| || | ||||| || |||||| ||||||| || || | || |
Sbjct 597006028 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGGGACATCATGTG 597006087
Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717
||||||| | | |||| || ||||| | ||| ||||| || | ||| || | |||||
Sbjct 597006088 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 597006146
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
|||||| ||| |||||||| |||| || | | ||||| ||||| || | || |
Sbjct 597006147 ACATATGTTGTGGTCTTTCCACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 597006206
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
|| ||||||||||| | | ||| |||||| |||||| ||| ||
Sbjct 597006207 GCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 597006255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561060930827760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |