Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 138 9e-27
seq2 114 1e-19
seq1 114 1e-19
seq10 111 1e-18
seq6 95.1 1e-13
seq8 89.7 4e-12
seq5 89.7 4e-12
seq13 87.8 1e-11
seq113971 86.0 5e-11
>seq129631
Length=630463
Score = 138 bits (152), Expect = 9e-27
Identities = 283/416 (68%), Gaps = 20/416 (5%)
Strand=Plus/Plus
Query 552178 ATTTCAATGGTAAAAAAT-TAAATGAAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGG 552235
||||| ||||||| || || | |||| ||||||||||||||| || ||||| |||
Sbjct 552144 ATTTCTTTGGTAAAGAACCTAGA--AAAGATGTTAATCCAGATGAAGCGGTTGCAGTTGG 552201
Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGT 552295
||| ||| |||||| || | | ||||| || |||| ||| || || |
Sbjct 552202 TGCTGCAGTTCAAGGAGGTGTACTTTCAGGC------GATGTTAAAG------ATGTTTT 552249
Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355
| | | ||||| ||||| | || | || | || || | || ||||| ||||||
Sbjct 552250 ATTGCTTGATGTAACTCCATTGTCATTAGGAATTGAGACTATGGGGGGTATAATGACTTC 552309
Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTC 552415
|| || ||| ||| || ||||||||| |||| | || || ||||| ||
Sbjct 552310 ACTGATAAATAAAAACACAACTATTCCTACTAAACATAGTCAAGTTTTTTCAACAGCAGA 552369
Query 552416 AGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATT--CACTAAA 552473
|||||||||| | ||||| ||||| || ||| || |||| ||||||||| |||||
Sbjct 552370 AGATAATCAATCCGCTGTAACAATACATATTCTTCAAGGTGAAAGAAAAAGAGCACTA-- 552427
Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533
||||| || || ||| |||||| |||| || ||| || || || | ||| |
Sbjct 552428 GATAACAAATCTCTAGGTCAATTTAATCTAGACGGAATTGAGCCAGCACCAAGAGGAACA 552487
Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
| |||||||||||||| || ||||| ||| || |||| || || |||| ||||
Sbjct 552488 GCACAAATTGAAGTTACATTTGATATTGATTCCGATGGTATATTACATGTATCTGC 552543
Score = 91.5 bits (100), Expect = 1e-12
Identities = 103/137 (75%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764
||||||||| | | |||||||| ||||||||||| ||| | | || | | ||| ||
Sbjct 551620 ACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATCCTGC 551561
Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824
||| | ||||| ||| ||||| | || |||||||||||||| |||||||| ||
Sbjct 551560 AATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGCAGGAACTGT 551501
Query 361825 AATCACTGCTT-TTTCA 361840
||| ||||||| |||||
Sbjct 551500 AATAACTGCTTCTTTCA 551484
>seq2
Length=690537804
Score = 114 bits (126), Expect = 1e-19
Identities = 206/301 (68%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348
||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | |
Sbjct 214652127 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 214652068
Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408
|||| || ||||| || || || || | ||| || || || ||||| |
Sbjct 214652067 TGACCAAGATTATCCCAAGGAACACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 214652008
Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468
|| | | ||| || ||| ||| ||| | || | ||||||||||| | ||
Sbjct 214652007 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 214651948
Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528
|| || ||||| ||||||| || | | || || |||||||||||||| ||||
Sbjct 214651947 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCACGTG 214651888
Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588
| || || ||||||||||| | || ||||| ||||||||||| ||| || ||| |||
Sbjct 214651887 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 214651828
Query 552589 C 552589
|
Sbjct 214651827 C 214651827
Score = 98.7 bits (108), Expect = 8e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|||| || | ||||| || ||||| || || ||||| |||||||| || | |||||
Sbjct 214655222 AAGTCACCAAGGCAGTGATCACTGTTCCTGCTTATTTCAATGACTCCCAGAGGACAGCTA 214655163
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
| ||||||||||| || ||||| || || ||||||| ||||| || || || ||||| |
Sbjct 214655162 CAAAAGATGCTGGCCGCATTGCAGGCCTGGATGTTCTCCGTATCATAAACGAGCCTACCG 214655103
Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537
| || | | |||||||| |||| |||
Sbjct 214655102 CGGCATCGTTGGCATATGGTTTTGAAAAA 214655074
>seq1
Length=593586810
Score = 114 bits (126), Expect = 1e-19
Identities = 206/301 (68%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348
||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | |
Sbjct 187344257 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 187344316
Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408
|||| || ||||| || || || || | ||| | || || || ||||| |
Sbjct 187344317 TGACCAAGATTATCCCAAGGAACACAACCCTCCCTACTTCGAAGTCAGAGGTCTTTTCAA 187344376
Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468
|| | | ||| || ||| ||| ||| | || | ||||||||||| | ||
Sbjct 187344377 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 187344436
Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528
|| || ||||| ||||||| || | | || || |||||||||||||| ||||
Sbjct 187344437 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 187344496
Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588
| || || ||||||||||| | || ||||| |||||||| || ||| || ||| |||
Sbjct 187344497 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAACGGCATTCTGTCTGTTGCTG 187344556
Query 552589 C 552589
|
Sbjct 187344557 C 187344557
>seq10
Length=712180895
Score = 111 bits (122), Expect = 1e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | |||||||| ||||| || ||||||||||| | || ||||| || ||||
Sbjct 247292530 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCACAGAGGCAGGCTACCAAGGATG 247292471
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| |||||||| | ||||| |||||||| |||||||| || || ||||||||
Sbjct 247292470 CTGGTGTCATTGCTGGCATCAATGTCCTTCGTATCATCAATGAGCCAACAGCTGCTGCCA 247292411
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||| | ||||| ||
Sbjct 247292410 TTGCTTATAGTCTTGACAA 247292392
>seq6
Length=841096276
Score = 95.1 bits (104), Expect = 1e-13
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451
|| || | || || || || || ||||| || || ||||| | || || || || || |
Sbjct 549068690 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 549068631
Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511
| |||||||| || |||||||||||| |||| | | || ||||||||||| |||||||
Sbjct 549068630 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTG 549068571
Query 550512 CTGCACTTGCATATGGA 550528
|||| || | ||||||
Sbjct 549068570 CTGCTCTGTCTTATGGA 549068554
>seq8
Length=673896466
Score = 89.7 bits (98), Expect = 4e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || ||||| || || ||||| | || | || || || || ||||||
Sbjct 670853051 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 670853110
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518
|| ||||||||||||||| |||| | | || ||||||||||| ||||||||||| ||
Sbjct 670853111 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 670853169
>seq5
Length=754274518
Score = 89.7 bits (98), Expect = 4e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || ||||| || || ||||| | || || || || || || ||||||
Sbjct 539607511 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 539607452
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| || |||||||||||| |||| | | || ||||| ||||| ||||||||||| ||
Sbjct 539607451 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 539607392
Query 550520 GCATATGGA 550528
| ||||||
Sbjct 539607391 TCTTATGGA 539607383
>seq13
Length=727576108
Score = 87.8 bits (96), Expect = 1e-11
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343
||||| ||| ||||||||||||| |||| |||||| | || ||||||||||||
Sbjct 689947981 TCTTTCTGAATGTTGTAATCAGCTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAA 689947922
Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386
|| || ||||||||||| |||||||| || || || || ||||
Sbjct 689947921 ATTAGCCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAA 689947879
>seq113971
Length=846
Score = 86.0 bits (94), Expect = 5e-11
Identities = 132/187 (71%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 424005 TAAAATACTTTTCTCCATACTTCCAATCAACAAGCAAATCTTTTATCAAAAATTGAGAAG 424064
|||| || ||||| || | |||||| || | | || ||||| | ||| ||| |
Sbjct 382 TAAAGTATTTTTCACCCTTTCTCCAATTAATTAAAAGATTTTTTACTAGAAAACTAGACG 441
Query 424065 TTATTAGTCTTCCTCTATTATGCATAAATCCAGTTGTATTTAACTCGCGCATGGCGGCAT 424124
| || | |||| |||||||||||| | || ||| |||||| | | ||| | || |
Sbjct 442 TAATCATTCTTAATCTATTATGCATCCAACCTGTTTGATTTAATTGTCTCATCCCTGCGT 501
Query 424125 CTACAATTGGAAATCCAGTGCATCCATTTTTCCATGCTTCAAAATACTTTTTATTATTT- 424183
|||| || ||||| || || |||||||||||| || | |||||| ||| | ||||||
Sbjct 502 CTACTATAGGAAAACCTGTATTTCCATTTTTCCAAGCGTTAAAATAATTTATGTTATTTG 561
Query 424184 TCCCATT 424190
||| |||
Sbjct 562 TCCAATT 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4021409121485660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |