Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq129631 138 9e-27 seq2 114 1e-19 seq1 114 1e-19 seq10 111 1e-18 seq6 95.1 1e-13 seq8 89.7 4e-12 seq5 89.7 4e-12 seq13 87.8 1e-11 seq113971 86.0 5e-11 >seq129631 Length=630463 Score = 138 bits (152), Expect = 9e-27 Identities = 283/416 (68%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 552178 ATTTCAATGGTAAAAAAT-TAAATGAAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGG 552235 ||||| ||||||| || || | |||| ||||||||||||||| || ||||| ||| Sbjct 552144 ATTTCTTTGGTAAAGAACCTAGA--AAAGATGTTAATCCAGATGAAGCGGTTGCAGTTGG 552201 Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGT 552295 ||| ||| |||||| || | | ||||| || |||| ||| || || | Sbjct 552202 TGCTGCAGTTCAAGGAGGTGTACTTTCAGGC------GATGTTAAAG------ATGTTTT 552249 Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355 | | | ||||| ||||| | || | || | || || | || ||||| |||||| Sbjct 552250 ATTGCTTGATGTAACTCCATTGTCATTAGGAATTGAGACTATGGGGGGTATAATGACTTC 552309 Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTC 552415 || || ||| ||| || ||||||||| |||| | || || ||||| || Sbjct 552310 ACTGATAAATAAAAACACAACTATTCCTACTAAACATAGTCAAGTTTTTTCAACAGCAGA 552369 Query 552416 AGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATT--CACTAAA 552473 |||||||||| | ||||| ||||| || ||| || |||| ||||||||| ||||| Sbjct 552370 AGATAATCAATCCGCTGTAACAATACATATTCTTCAAGGTGAAAGAAAAAGAGCACTA-- 552427 Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533 ||||| || || ||| |||||| |||| || ||| || || || | ||| | Sbjct 552428 GATAACAAATCTCTAGGTCAATTTAATCTAGACGGAATTGAGCCAGCACCAAGAGGAACA 552487 Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | |||||||||||||| || ||||| ||| || |||| || || |||| |||| Sbjct 552488 GCACAAATTGAAGTTACATTTGATATTGATTCCGATGGTATATTACATGTATCTGC 552543 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||| | | |||||||| ||||||||||| ||| | | || | | ||| || Sbjct 551620 ACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATCCTGC 551561 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 ||| | ||||| ||| ||||| | || |||||||||||||| |||||||| || Sbjct 551560 AATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGCAGGAACTGT 551501 Query 361825 AATCACTGCTT-TTTCA 361840 ||| ||||||| ||||| Sbjct 551500 AATAACTGCTTCTTTCA 551484 >seq2 Length=690537804 Score = 114 bits (126), Expect = 1e-19 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 ||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | | Sbjct 214652127 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 214652068 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||||| || || || || | ||| || || || ||||| | Sbjct 214652067 TGACCAAGATTATCCCAAGGAACACAACCCTCCCTACCTCCAAGTCAGAGGTCTTTTCAA 214652008 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| || ||| ||| ||| | || | ||||||||||| | || Sbjct 214652007 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 214651948 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || ||||| ||||||| || | | || || |||||||||||||| |||| Sbjct 214651947 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCACGTG 214651888 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || ||||||||||| | || ||||| ||||||||||| ||| || ||| ||| Sbjct 214651887 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAATGGCATTCTGTCTGTTGCTG 214651828 Query 552589 C 552589 | Sbjct 214651827 C 214651827 Score = 98.7 bits (108), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || ||||| || || ||||| |||||||| || | ||||| Sbjct 214655222 AAGTCACCAAGGCAGTGATCACTGTTCCTGCTTATTTCAATGACTCCCAGAGGACAGCTA 214655163 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || ||||| || || ||||||| ||||| || || || ||||| | Sbjct 214655162 CAAAAGATGCTGGCCGCATTGCAGGCCTGGATGTTCTCCGTATCATAAACGAGCCTACCG 214655103 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || | | |||||||| |||| ||| Sbjct 214655102 CGGCATCGTTGGCATATGGTTTTGAAAAA 214655074 >seq1 Length=593586810 Score = 114 bits (126), Expect = 1e-19 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 ||||||| ||| | |||||||| || || ||||||||||| || ||| | || || | | Sbjct 187344257 ATATTGTGCTTCTTGATGTTACGCCACTGTCTCTTGGTTTGGAGACACTGGGTGGGGTGA 187344316 Query 552349 TGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTA 552408 |||| || ||||| || || || || | ||| | || || || ||||| | Sbjct 187344317 TGACCAAGATTATCCCAAGGAACACAACCCTCCCTACTTCGAAGTCAGAGGTCTTTTCAA 187344376 Query 552409 CGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCA 552468 || | | ||| || ||| ||| ||| | || | ||||||||||| | || Sbjct 187344377 CGGCTGCTGATGGACAGACTAGTGTGGAGATTAATGTTCTCCAAGGAGAAAGAGAGTTTG 187344436 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || ||||| ||||||| || | | || || |||||||||||||| |||| Sbjct 187344437 TTAGGGACAATAAATCCCTTGGTAGCTTCAGGCTTGATGGAATTCCTCCTGCTCCGCGTG 187344496 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || ||||||||||| | || ||||| |||||||| || ||| || ||| ||| Sbjct 187344497 GTGTTCCCCAAATTGAAGTCAAGTTTGATATTGATGCCAACGGCATTCTGTCTGTTGCTG 187344556 Query 552589 C 552589 | Sbjct 187344557 C 187344557 >seq10 Length=712180895 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| ||||| || ||||||||||| | || ||||| || |||| Sbjct 247292530 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCACAGAGGCAGGCTACCAAGGATG 247292471 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| | ||||| |||||||| |||||||| || || |||||||| Sbjct 247292470 CTGGTGTCATTGCTGGCATCAATGTCCTTCGTATCATCAATGAGCCAACAGCTGCTGCCA 247292411 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||| | ||||| || Sbjct 247292410 TTGCTTATAGTCTTGACAA 247292392 >seq6 Length=841096276 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 549068690 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 549068631 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||||||||| ||||||| Sbjct 549068630 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTG 549068571 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 549068570 CTGCTCTGTCTTATGGA 549068554 >seq8 Length=673896466 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || | || || || || |||||| Sbjct 670853051 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 670853110 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 670853111 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 670853169 >seq5 Length=754274518 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || || || || || || |||||| Sbjct 539607511 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 539607452 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||| ||||| ||||||||||| || Sbjct 539607451 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 539607392 Query 550520 GCATATGGA 550528 | |||||| Sbjct 539607391 TCTTATGGA 539607383 >seq13 Length=727576108 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||||||||||| |||| |||||| | || |||||||||||| Sbjct 689947981 TCTTTCTGAATGTTGTAATCAGCTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAA 689947922 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 || || ||||||||||| |||||||| || || || || |||| Sbjct 689947921 ATTAGCCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAA 689947879 >seq113971 Length=846 Score = 86.0 bits (94), Expect = 5e-11 Identities = 132/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 424005 TAAAATACTTTTCTCCATACTTCCAATCAACAAGCAAATCTTTTATCAAAAATTGAGAAG 424064 |||| || ||||| || | |||||| || | | || ||||| | ||| ||| | Sbjct 382 TAAAGTATTTTTCACCCTTTCTCCAATTAATTAAAAGATTTTTTACTAGAAAACTAGACG 441 Query 424065 TTATTAGTCTTCCTCTATTATGCATAAATCCAGTTGTATTTAACTCGCGCATGGCGGCAT 424124 | || | |||| |||||||||||| | || ||| |||||| | | ||| | || | Sbjct 442 TAATCATTCTTAATCTATTATGCATCCAACCTGTTTGATTTAATTGTCTCATCCCTGCGT 501 Query 424125 CTACAATTGGAAATCCAGTGCATCCATTTTTCCATGCTTCAAAATACTTTTTATTATTT- 424183 |||| || ||||| || || |||||||||||| || | |||||| ||| | |||||| Sbjct 502 CTACTATAGGAAAACCTGTATTTCCATTTTTCCAAGCGTTAAAATAATTTATGTTATTTG 561 Query 424184 TCCCATT 424190 ||| ||| Sbjct 562 TCCAATT 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021409121485660