Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq129631 149 1e-30 >seq129631 Length=630463 Score = 149 bits (164), Expect = 1e-30 Identities = 648/1018 (64%), Gaps = 8/1018 (1%) Strand=Plus/Minus Query 207854 TACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAAC 207913 ||||||||| || || || || || | || ||| | |||| ||| ||||| || Sbjct 525276 TACTTCTGATTCAATTTGGCCCACTAAATATGAACTGATTTCTGTTTCTTGAGGGGCCGT 525217 Query 207914 CTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTT 207973 || | | |||| | ||| || || ||||| ||||||||||| || || ||| Sbjct 525216 TTGTATATAATCAGAATTTAACCAAGAATTGATCCAAGGAATTGGGTTTGATTTTTTTTC 525157 Query 207974 GAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTG 208033 || || | | ||||| || || |||||||| | || ||||| || || | ||| || Sbjct 525156 AAAAGGCATTTTAAAACCTATTGCATGCATACGAACATTAGTAATATATTCTATATATTG 525097 Query 208034 GCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCA 208093 || | || |||| || | || | ||| |||||||||| |||| ||| | |||||| Sbjct 525096 ACATAATATATCTTGATTTAATCCCAACATCGAACCATCTTGAAACAAATATTTAGCCCA 525037 Query 208094 CTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGC 208153 | ||||||||| | | | || | || || | || ||||| | || ||| Sbjct 525036 TTTTTTTTCTTGTTCTGAAGCAGATATAAATATTTTAATTGCCTCTTCTCTGCATTCTAA 524977 Query 208154 TGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTG 208213 | | | ||| | | | || ||| | || | | || | || || || Sbjct 524976 AATAGTATTTTTCATATTTTCGTTATTTTTTTCGTTATTTAAAATATTTAAAATATGTTG 524917 Query 208214 AGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACC 208273 ||| ||| || ||| | |||||| || ||||| || | | ||| || ||||| || || Sbjct 524916 AGTTCCAGTCAAGTGTAATGCTTCATCTCGTGCTATTAATCGGATAATTTTAGCATTTCC 524857 Query 208274 TTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAAT 208333 |||||| | | | ||| |||||||||||||| ||||| || ||||| || | ||| Sbjct 524856 TTCCATTATTTCTCTTTCAGCAAATGCGAATGAACAAGCAAAACTAACGTAAAATCTAAT 524797 Query 208334 AGCTTCAAGTGAGTTGATAG--ATTGCAGAGCCAGGTACAGTGCTTTCTT-AATAGCACG 208390 ||||| ||| ||| | | ||| | | || || ||| ||| || |||| Sbjct 524796 GGCTTCTAGTACGTTTACACTAATTAAACAA--AGATATAGTCTTTTTTTTAATAAGTTT 524739 Query 208391 AAGATTAACATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTA 208450 || ||| | | || || | ||||| | | || | || || || ||| | Sbjct 524738 AA-ATTGATTTCAATTTTTTTCCCATTAATTTTATGATGTCCTTCTCCAAGTAAATGCCA 524680 Query 208451 CTG-GTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCT 208509 | | || | | ||| | ||| || || ||| |||| | | | ||||| | | Sbjct 524679 ATAAGCTGTT-ATTTTAATTAATTTATCATAATAAATAGAAATATCTTCTGCACGATCAT 524621 Query 208510 TGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCC 208569 | || | || ||| | || |||||||| || | || |||| |||| || || | Sbjct 524620 TAATGTTTTTATTAGAAATAATATCATCAAATACGACAGATGGATGATTAATAATATTTC 524561 Query 208570 TGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCC 208629 | || || || ||||| ||| || || || || || || ||| || ||| || Sbjct 524560 TAATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCC 524501 Query 208630 ATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCT 208689 ||||||| | || || ||||| || || | || || | ||| |||| | || | Sbjct 524500 ATGTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTT 524441 Query 208690 GGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGAT 208749 | ||||| || |||| || |||||||| | ||||| || || | ||||| |||| | Sbjct 524440 GAATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAG 524381 Query 208750 CTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGA 208809 |||||| | || || | || || | ||||| |||||| || | ||| | Sbjct 524380 AAGGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAA 524321 Query 208810 AGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTA 208867 | || ||||||||||| ||||| ||||| ||||| || | ||| || ||||| || || Sbjct 524320 AAAATGAAAGTTGTTTTTCAATTAGTTTTTCAAAAATATTATATTTTTGTTGATCATA 524263 Score = 95.1 bits (104), Expect = 2e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 16835 TGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 |||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 130348 TGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTA 130289 Query 16895 CA 16896 || Sbjct 130288 CA 130287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909395960596880