Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 149 1e-30
>seq129631
Length=630463
Score = 149 bits (164), Expect = 1e-30
Identities = 648/1018 (64%), Gaps = 8/1018 (1%)
Strand=Plus/Minus
Query 207854 TACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAAC 207913
||||||||| || || || || || | || ||| | |||| ||| ||||| ||
Sbjct 525276 TACTTCTGATTCAATTTGGCCCACTAAATATGAACTGATTTCTGTTTCTTGAGGGGCCGT 525217
Query 207914 CTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTT 207973
|| | | |||| | ||| || || ||||| ||||||||||| || || |||
Sbjct 525216 TTGTATATAATCAGAATTTAACCAAGAATTGATCCAAGGAATTGGGTTTGATTTTTTTTC 525157
Query 207974 GAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTG 208033
|| || | | ||||| || || |||||||| | || ||||| || || | ||| ||
Sbjct 525156 AAAAGGCATTTTAAAACCTATTGCATGCATACGAACATTAGTAATATATTCTATATATTG 525097
Query 208034 GCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCA 208093
|| | || |||| || | || | ||| |||||||||| |||| ||| | ||||||
Sbjct 525096 ACATAATATATCTTGATTTAATCCCAACATCGAACCATCTTGAAACAAATATTTAGCCCA 525037
Query 208094 CTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGC 208153
| ||||||||| | | | || | || || | || ||||| | || |||
Sbjct 525036 TTTTTTTTCTTGTTCTGAAGCAGATATAAATATTTTAATTGCCTCTTCTCTGCATTCTAA 524977
Query 208154 TGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTG 208213
| | | ||| | | | || ||| | || | | || | || || ||
Sbjct 524976 AATAGTATTTTTCATATTTTCGTTATTTTTTTCGTTATTTAAAATATTTAAAATATGTTG 524917
Query 208214 AGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACC 208273
||| ||| || ||| | |||||| || ||||| || | | ||| || ||||| || ||
Sbjct 524916 AGTTCCAGTCAAGTGTAATGCTTCATCTCGTGCTATTAATCGGATAATTTTAGCATTTCC 524857
Query 208274 TTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAAT 208333
|||||| | | | ||| |||||||||||||| ||||| || ||||| || | |||
Sbjct 524856 TTCCATTATTTCTCTTTCAGCAAATGCGAATGAACAAGCAAAACTAACGTAAAATCTAAT 524797
Query 208334 AGCTTCAAGTGAGTTGATAG--ATTGCAGAGCCAGGTACAGTGCTTTCTT-AATAGCACG 208390
||||| ||| ||| | | ||| | | || || ||| ||| || ||||
Sbjct 524796 GGCTTCTAGTACGTTTACACTAATTAAACAA--AGATATAGTCTTTTTTTTAATAAGTTT 524739
Query 208391 AAGATTAACATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTA 208450
|| ||| | | || || | ||||| | | || | || || || ||| |
Sbjct 524738 AA-ATTGATTTCAATTTTTTTCCCATTAATTTTATGATGTCCTTCTCCAAGTAAATGCCA 524680
Query 208451 CTG-GTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCT 208509
| | || | | ||| | ||| || || ||| |||| | | | ||||| | |
Sbjct 524679 ATAAGCTGTT-ATTTTAATTAATTTATCATAATAAATAGAAATATCTTCTGCACGATCAT 524621
Query 208510 TGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCC 208569
| || | || ||| | || |||||||| || | || |||| |||| || || |
Sbjct 524620 TAATGTTTTTATTAGAAATAATATCATCAAATACGACAGATGGATGATTAATAATATTTC 524561
Query 208570 TGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCC 208629
| || || || ||||| ||| || || || || || || ||| || ||| ||
Sbjct 524560 TAATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCC 524501
Query 208630 ATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCT 208689
||||||| | || || ||||| || || | || || | ||| |||| | || |
Sbjct 524500 ATGTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTT 524441
Query 208690 GGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGAT 208749
| ||||| || |||| || |||||||| | ||||| || || | ||||| |||| |
Sbjct 524440 GAATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAG 524381
Query 208750 CTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGA 208809
|||||| | || || | || || | ||||| |||||| || | ||| |
Sbjct 524380 AAGGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAA 524321
Query 208810 AGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTA 208867
| || ||||||||||| ||||| ||||| ||||| || | ||| || ||||| || ||
Sbjct 524320 AAAATGAAAGTTGTTTTTCAATTAGTTTTTCAAAAATATTATATTTTTGTTGATCATA 524263
Score = 95.1 bits (104), Expect = 2e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 16835 TGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894
|||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 130348 TGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTA 130289
Query 16895 CA 16896
||
Sbjct 130288 CA 130287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 909395960596880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |