Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq129631 145 8e-30 >seq129631 Length=630463 Score = 145 bits (160), Expect = 8e-30 Identities = 555/858 (65%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 |||||| || || | ||| | | ||||||| | |||||| | | ||||||||||| || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 |||| || || | ||| | | |||||| ||||| |||||| || || | | | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAAG 141980 ||| || | ||| | || |||||||||||||| || | || || || ||| ||| Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGC-GC-TTTGGAAG 522448 Query 141981 T--TTCCAAAATGGTGTTACA-CCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037 | || |||| || | ||| || || || |||| || | || | || Sbjct 522447 TGTTTATAAAAAGGAAT-ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCC 522389 Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097 | || || ||| |||| || || || || || || |||| ||||||||||||||| Sbjct 522388 TAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTAC 522329 Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157 ||| || || | || |||| || | || |||| | ||||||||| ||||| Sbjct 522328 AATTGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACA 522269 Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217 |||||||||||||||||||| || | || || | | ||| || || |||| | Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA----GAG 522213 Query 142218 TTGTTTTAA----TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTA 142273 | |||||| || |||||| |||||| | | || | ||||| ||| | Sbjct 522212 ATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTT- 522154 Query 142274 AAGGCTCATCTTGATGTAAACA--CAT--ACCAATGAGTATAAACATAAATTGTGGTGTT 142329 || | || | | ||| | ||| | || | ||| | | |||||||| || Sbjct 522153 --TTTTCGTATTTA-GAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTT 522097 Query 142330 TCATAAATTTTACCAGAAGATCGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCA 142389 ||||| |||| |||| | |||| || || | |||||| ||| | ||| | | Sbjct 522096 TCATATATTTCTCCAGTAACACGATTTTGTAATAAATACTTTCCTTCTAATTGTTTTACT 522037 Query 142390 CCTGCATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATA 142448 ||||||| | |||||| | ||||| ||||||||||| |||||| | ||| |||| Sbjct 522036 GCTGCATAAGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTCATTTCTA-CATA 521978 Query 142449 GTCTGCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTACACCAGA 142508 ||| ||| | ||| ||| | || || |||||| || | || Sbjct 521977 TTCTTTAAAAGAATAATTTTGTAATAATTTTTCGTCATATTTTCCTAAATTGACCATTTT 521918 Query 142509 TTTAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAGACC 142568 ||| ||||||| ||| | | ||||| ||||||||||| | ||| ||| | |||| Sbjct 521917 TTTTACATGATGATACAGAATAGGTGGTTCAAATTGACCGTAAGCTTTTTTCCTAAGATG 521858 Query 142569 AAACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGACTTGAATGGAATC 142628 ||| || || || ||| ||| | |||||||||||| | | || | ||| |||| Sbjct 521857 AAAAATAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTTCAGAAATTAAATC 521798 Query 142629 GGCTGCAACTTTAACAAT 142646 |||||| |||||| ||| Sbjct 521797 TGCTGCAGCTTTAATAAT 521780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532276290652080