Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_018087.3
Length=166687
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 145 8e-30
>seq129631
Length=630463
Score = 145 bits (160), Expect = 8e-30
Identities = 555/858 (65%), Gaps = 24/858 (3%)
Strand=Plus/Minus
Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860
|||||| || || | ||| | | ||||||| | |||||| | | ||||||||||| ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920
|||| || || | ||| | | |||||| ||||| |||||| || || | | |
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAAG 141980
||| || | ||| | || |||||||||||||| || | || || || ||| |||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGC-GC-TTTGGAAG 522448
Query 141981 T--TTCCAAAATGGTGTTACA-CCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037
| || |||| || | ||| || || || |||| || | || | ||
Sbjct 522447 TGTTTATAAAAAGGAAT-ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCC 522389
Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097
| || || ||| |||| || || || || || || |||| |||||||||||||||
Sbjct 522388 TAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTAC 522329
Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157
||| || || | || |||| || | || |||| | ||||||||| |||||
Sbjct 522328 AATTGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACA 522269
Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217
|||||||||||||||||||| || | || || | | ||| || || |||| |
Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA----GAG 522213
Query 142218 TTGTTTTAA----TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTA 142273
| |||||| || |||||| |||||| | | || | ||||| ||| |
Sbjct 522212 ATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTT- 522154
Query 142274 AAGGCTCATCTTGATGTAAACA--CAT--ACCAATGAGTATAAACATAAATTGTGGTGTT 142329
|| | || | | ||| | ||| | || | ||| | | |||||||| ||
Sbjct 522153 --TTTTCGTATTTA-GAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTT 522097
Query 142330 TCATAAATTTTACCAGAAGATCGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCA 142389
||||| |||| |||| | |||| || || | |||||| ||| | ||| | |
Sbjct 522096 TCATATATTTCTCCAGTAACACGATTTTGTAATAAATACTTTCCTTCTAATTGTTTTACT 522037
Query 142390 CCTGCATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATA 142448
||||||| | |||||| | ||||| ||||||||||| |||||| | ||| ||||
Sbjct 522036 GCTGCATAAGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTCATTTCTA-CATA 521978
Query 142449 GTCTGCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTACACCAGA 142508
||| ||| | ||| ||| | || || |||||| || | ||
Sbjct 521977 TTCTTTAAAAGAATAATTTTGTAATAATTTTTCGTCATATTTTCCTAAATTGACCATTTT 521918
Query 142509 TTTAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAGACC 142568
||| ||||||| ||| | | ||||| ||||||||||| | ||| ||| | ||||
Sbjct 521917 TTTTACATGATGATACAGAATAGGTGGTTCAAATTGACCGTAAGCTTTTTTCCTAAGATG 521858
Query 142569 AAACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGACTTGAATGGAATC 142628
||| || || || ||| ||| | |||||||||||| | | || | ||| ||||
Sbjct 521857 AAAAATAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTTCAGAAATTAAATC 521798
Query 142629 GGCTGCAACTTTAACAAT 142646
|||||| |||||| |||
Sbjct 521797 TGCTGCAGCTTTAATAAT 521780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532276290652080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |