Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq129631 554 3e-153 >seq129631 Length=630463 Score = 554 bits (614), Expect = 3e-153 Identities = 1404/2118 (66%), Gaps = 23/2118 (1%) Strand=Plus/Plus Query 70642 TCAGTATCTCAAGTTGAATTGAAATCTCATATCCAATTTTATGAAGGTATGAAGACAGAA 70701 || || |||||||||||||| || | ||| ||||||||| | ||| || || | Sbjct 521705 TCTGTTTCTCAAGTTGAATTACGTTCACGTATTCAATTTTATAACAATATAAAAACTGTG 521764 Query 70702 GATATTCACGAAATAATCATTAAAGCAGCAGCAGATTTAATATCGGTTGACACTCCTGAT 70761 |||| || || | ||| |||||||| |||||||||||||| || | || || |||||| Sbjct 521765 AATATACATGAGACAATTATTAAAGCTGCAGCAGATTTAATTTCTGAAGATACACCTGAT 521824 Query 70762 TATCAGTATCTCTCATCTCGTTTAGCCGTATTTCATTTACGTAAACAAGCCTATGGTGAT 70821 ||||| ||| | || | | | || | |||||| | | ||| |||| || ||| | Sbjct 521825 TATCAATATATGGCAGCAAGACTTGCTATTTTTCATCTTAGGAAAAAAGCTTACGGTCAA 521884 Query 70822 TTTGTACCACCTCGCCT-TATCAACCATATAGCTAAGTTGACAGATAGTGGTCATTATGA 70880 |||| ||||||| || ||||| | || || || || || || | ||||| Sbjct 521885 TTTGAACCACCTATTCTGTATCATC-ATGTAAAAAAAATGGTCAATTTAGGAAAATATGA 521943 Query 70881 TAAAGAAATTCTTG-AAGATTTTACCATTGGTGAAATTGAAGAATT-AGGTAATTACATT 70938 || ||||| || || ||| | | || ||| || |||| | | | ||| || Sbjct 521944 CGAA-AAATTATTACAAAATTATTCTTTTAAAGAATATGTAGAAATGAATTCATTT-ATC 522001 Query 70939 CAGCATGACCGTGATATGAATATTGCCTATGCAGGTATTAAGCAATTAATCGGTAAGTAT 70998 | ||| ||||| |||||| || | ||||||| | || |||||| || |||||| Sbjct 522002 GATCATTGGCGTGACATGAATTTTTCTTATGCAGCAGTAAAACAATTAGAAGGAAAGTAT 522061 Query 70999 TTGGTTCAGGACAGAGTTAATGGTATTATCTTTGAAACCCCTCAAATGCTTTATATGCTT 71058 || | || | | |||| ||| || | ||||| | ||| | ||||||| || Sbjct 522062 TTATTACAAAATCGTGTTACTGGAGAAATATATGAAAGTGCACAATT--TTTATATATTT 522119 Query 71059 GTTGGTATG--TGTTTATACTCTAAAAAGTATAGCGGCAAAGTTCGTATGAATTACATCA 71116 | || || |||| |||||| | | | || ||||||||||||| || Sbjct 522120 TAATATCTGCATGCTTATTTTCTAAATACGAAAAA---AATATTCGTATGAATTATATTC 522176 Query 71117 AAGAGTGGTATGATGCAACAAGTACATTTGAGCTATCATTACCAACACCTATTATGGGTG 71176 | | ||| |||||| || ||| | |||| |||| ||||| |||||| | Sbjct 522177 AGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAG 522236 Query 71177 GTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAGATTGACAGTGGCGATAGCC 71236 | ||| | || ||||| | ||||||||| |||||| ||||| ||| |||| Sbjct 522237 GAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATT 522296 Query 71237 TAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTATCCAAACGTGCAGGTA 71296 || | || |||||||| | | ||| ||||||| || ||||| || |||| ||||| | Sbjct 522297 TAAACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAA 522356 Query 71297 TCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATACGCAATGGTGAAGCAG 71356 | || || || | ||| ||||||| || |||||||||||||| | ||||| |||||| Sbjct 522357 TAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCAT 522416 Query 71357 TTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAATCTTGCTCTC 71416 ||||||| || | || || || | || || ||||||| ||||| |||||||| |||| Sbjct 522417 TTCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTC 522476 Query 71417 AGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCATTTAGAAGTTG 71476 | || || | | || || || || || | || ||||| || |||||| ||||| ||| Sbjct 522477 AAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTG 522536 Query 71477 AAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTACGTCATTTAG 71536 ||| | ||||| || |||||||| | ||| ||||||| || | ||||||||| | | Sbjct 522537 AAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTG 522596 Query 71537 ACTATGCTGTGCAATTCAATAAGCTTATGTACCAACGATTGATTACAGGTGGCAATATTA 71596 | |||||||| ||| | ||||| | ||||| ||| || || | ||| || |||| Sbjct 522597 ATTATGCTGTACAAATTAATAAATTAATGTATCAAAGAATGCTACTAGGAAAAAAAATTA 522656 Query 71597 CATTGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCATTCTTTGCCGACCAAGATA 71656 |||| || ||| || ||| |||||| | | || || |||| ||| | | Sbjct 522657 CATTATTTAGTCCTTCTGACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAAAAAA 522716 Query 71657 AGTTTGA--AAAGTTATATACTGAAGCTGAAGGTAATCCTATGATTATCCAAAAGTCAGT 71714 | ||| | ||| |||||| | || |||| ||| | || | |||| ||| Sbjct 522717 AATTTAAGGAAATTTATAT--TAAATATGAAAAAAATAGCAATATAAGAAAAAAA--AGT 522772 Query 71715 A--AAAGCTAGTGACTTATTTACATTGTTTGCACAAGAGCGAGCAGGTACAGGTCGTATC 71772 | || || | ||| || || || || | ||| ||||| || || |||||| Sbjct 522773 ATTAATGCAATTGATTTGTTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGTATC 522832 Query 71773 TATCTTCAAAACGTAGATCACTGTAATACCAATAGCCCATTTATTGCAGAAGTTGCCCCT 71832 ||| | ||||| |||||||| |||||| | |||| ||||||| | | || | || | Sbjct 522833 TATATACAAAATGTAGATCATTGTAATTCACATAGTCCATTTAATTCTAAATTGGCAACA 522892 Query 71833 ATTCGTATGAGTAACTTATGCCTTGAAATTGCATTACCAACTGAACCTATGCAGGATATT 71892 || | |||||| || | |||||| |||| || || |||| | | ||||| Sbjct 522893 ATAAGACAATCTAACTTGTGTTTAGAAATTACATTGCCTACAAAACCACTAAATAATATT 522952 Query 71893 AATAAGCCTGAAGGTGAAATTGCATTATGTACATTAGCTGCATTCAATCTTGGTGCCATT 71952 || | | || ||||||||| | ||||| || | || ||||||| ||| ||| Sbjct 522953 GATGATAAAAATGGAGAAATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGTTTAATT 523012 Query 71953 AAAGATTTAGGTCGTATGGAAAAATTATCCGAATTAGTTATTAGAGCATTAGATGCTTTA 72012 || ||||| | | | | ||||||| | || | | | || ||||||| || Sbjct 523013 AATAATTTAAATGATCTCAAGGAATTATCTATACTATCTGTACGCGCTTTAGATGAAATA 523072 Query 72013 CTTGATTACCAAGATTATCCAATACTAGCTGCTGAAAATGCTACCAAGCGAAGACGTACT 72072 | || || ||| | |||||| || || ||| |||| || | ||||||| || Sbjct 523073 TTAGAATATCAAAACTATCCAGTATTATGTGCAAAAAAATCTGCTGTTTCAAGACGTTCT 523132 Query 72073 TTAGGTGTTGGCATTATTAATTATGCTCATCACTTAGCTAAAAATGGTGTTAAATATTCT 72132 ||||| |||| | ||||||| ||| || | ||||||||||| || ||||| Sbjct 523133 TTAGGAATTGGTGTAATTAATTTTGCATATTATTTAGCTAAAAACAAAGTACGCTATTCA 523192 Query 72133 GATGGCAGTGCCAACAATTTAACTCATGAACTCTTCGAAAGTTTTCAGTATTACCTATTG 72192 ||||||||||| || |||||||| ||| || || ||| | |||||||| || | Sbjct 523193 GATGGCAGTGCAAAAAATTTAACGCATAAAACTTTTGAAGCAATACAGTATTATTTACTA 523252 Query 72193 AAAGCAAGTTGTGATTTAGCCAAAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACT 72252 ||||| ||||| |||||||||||| |||| ||||| ||| || | || | | Sbjct 523253 AAAGCTTCCTGTGAATTAGCCAAAGAAAAAGGATCTTGTTTATTATTTAATCAAACTAAT 523312 Query 72253 TATTCACAGGGTATATTACCTATTGACCGCTATAATAAGTCAGTAGATGGTATTCATAGT 72312 |||| |||| | || ||||| ||||| || |||||| || || | Sbjct 523313 TATTATTTAGGTAAGCTTCCAATTGATACATATAAAAAAGATGTAGATTCGATATGTAAT 523372 Query 72313 GAAGAGTTACATCTTCCGTGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGT 72372 ||| |||||| | ||| | ||| || || | ||| ||||| || ||| | Sbjct 523373 GAACCATTACATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGA 523432 Query 72373 AATTCTACTGTATCCTCATTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACA 72432 ||||| ||| |||| | || ||||| ||||| |||||| |||||||||| || Sbjct 523433 AATTCCACTTTATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACT 523492 Query 72433 AATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTG 72492 |||||||||||||| || | ||||| | || || ||||| ||||||||| || || Sbjct 523493 AATGGTATTGAACCTCCAAGAGGTTTTGTCAGTATAAAAGCTTCTAAAGATGGAATGCTG 523552 Query 72493 AAGCAAGTAGTACCTCATATTGGTACAATGGCTA-ATGACTATGAATTGTTGTGGAATAT 72551 ||||| || || | || | ||| | | |||| |||||||| | ||| |||| Sbjct 523553 CGACAAGTGGTTCCAGA-ATATAAAAAATTGAAATATGAATATGAATTACTTTGGGATAT 523611 Query 72552 TCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCAGGC 72611 |||| |||| || || | ||| | || ||||| ||||| |||||| | ||||| | Sbjct 523612 ACCAAATAATACAGGATACTTAGAACTTGTGGCAATTATGCAGAAGTTTATTGATCAATC 523671 Query 72612 AATCTCTGCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTAA 72671 || || | ||||| |||||||| || | ||| ||||| ||| | || | || Sbjct 523672 TATTTCAGTTAACACTAATTATGATCCAAAACGATTTTTAAATGAAAAAATACCTATAAA 523731 Query 72672 GCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATTCTATTACCA 72731 ||| || | | |||||| | || ||||| ||||| | ||||| | ||||| || Sbjct 523732 ACAACTTATATATGATTTACTTACAGCATATAAACTTGGAATAAAAACTCTTTATTATCA 523791 Query 72732 TAACACCCGTGATGGTGC 72749 || || ||||||||||| Sbjct 523792 AAATACTCGTGATGGTGC 523809 Score = 228 bits (252), Expect = 5e-55 Identities = 705/1077 (65%), Gaps = 44/1077 (4%) Strand=Plus/Plus Query 72917 TACGACCAACAAAAGCTTAGTGCATTTGAAAAATTAATAGAAAAACAATTGAGCTTCTTT 72976 || || |||||||| || | ||||||||| |||| ||||||||| | || ||| Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322 Query 72977 TGGCGACCTGATGAAATAGATGTATCAAAAGACCGTTCTGATTGGCAAAAAATGACTGAC 73036 ||| |||| || ||||||||| |||| ||||| | |||| ||||| | || Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCT--- 524379 Query 73037 TCT---GAAAAGCATATTTTCATATCAAATCTTAAATACCAAACATTGCTTGATAGCATG 73093 ||| ||||| |||||||| ||| ||| | ||||| ||||| || |||||| || Sbjct 524380 TCTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATT 524439 Query 73094 GCTGCACGTTCTGTTAATATGGTATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACA 73153 | | | | ||| || | || | || | || ||| | || ||| | |||||| Sbjct 524440 CAAGGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACA 524499 Query 73154 TGGATTGAAACATGGGCATTTAGTGAAACTATTCACTCTCGCTCATATACTCATATCTTG 73213 ||||||||||||||| | ||| || || ||||| || || |||||||| ||||| | Sbjct 524500 TGGATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATT 524559 Query 73214 CGTAACCTTTTCGTAGATCCAAGTGAAGTATTTGATGATATTA---CAATTAACCCTGAA 73270 | || || | ||||| || |||||||||||||||| | | ||| || Sbjct 524560 AGAAATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAA-----AA 524614 Query 73271 ATATTAA--AACGTGCTGAAAGTATCGCCAAATACTTTGATGATGTGATACTGACAACTC 73328 | ||||| | ||||| ||| ||| | | || | |||| | | || | ||| Sbjct 524615 ACATTAATGATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAAC-- 524672 Query 73329 AGTTCATT--CAATCTCAAGGTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGT 73386 || | ||| || | | || ||||| | || | | ||||| || | || | | Sbjct 524673 AGCTTATTGGCATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAAT 524732 Query 73387 C--TCAAAGCGTAAGCTTAAAGAGCGACTTTATCTTGCCGTTTG--TGCTGTCAATGCCT 73442 | | || | || | ||| | |||| |||||| |||| | ||| || | Sbjct 524733 CAATTTAAACTTAT--TAAAAAAAAGACTATATCTTT--GTTTAATTAGTGTAAACGTAC 524788 Query 73443 TAGAAGCTATCCGCTTTTACGTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGC 73502 ||||||| || | |||||||| ||||| || |||||||| || ||||| ||| | || Sbjct 524789 TAGAAGCCATTAGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAA 524848 Query 73503 TACTTGAAGGTAATGCCAAGATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAA 73562 || | ||||| ||||| || ||||| | |||| || || |||||||| || ||||| | Sbjct 524849 TAATGGAAGGAAATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGA 524908 Query 73563 CTGGTACTCAGATGATTCTGAATAACTGGCGAACTGGCAAGGATGATCCTGAAA---TGC 73619 |||| ||||| ||| | |||| | || | | | | || |||| || Sbjct 524909 CTGGAACTCAACATATTTTAAATATTTT---AAATAACGAAAAAAATAACGAAAATATGA 524965 Query 73620 AAGAGA---TTGCAGAAGACCTTAAAGATGTAAGTCTTAAGATCTTTATGGATGTTGTTG 73676 || | | || |||| | |||| | || |||| || ||||| || | | Sbjct 524966 AAAATACTATTTTAGAATGCAGAGAAGAGGCAA---TTAAAATATTTATATCTGCTTCAG 525022 Query 73677 AAGAAGAAAAGCAATGGGCAAAATATCTATTCAAAGATGGGTCAATGATCGGTCTTAATG 73736 || ||||||| ||||||| |||||| | || ||||||| || ||| | || | ||| Sbjct 525023 AACAAGAAAAAAAATGGGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATC 525082 Query 73737 AAGAAATACTTTGCCAGTACGTTGAGTACATTGCTAATCATCGTTTACATAGCCTAGGCT 73796 |||| ||| | || || || | || || ||| ||||| |||| | ||| |||| | Sbjct 525083 AAGATATATTATGTCAATATATAGAATATATTACTAATGTTCGTATGCATGCAATAGGTT 525142 Query 73797 TTGAAAAACCATTTGATATTAAGTCTAATCCTATTCCGTGGATTAGCTCTTATCTAACAA 73856 || ||| || ||||| | || || || || ||||| ||||| | |||| ||| Sbjct 525143 TTAAAATGCCTTTTGAAAAAAAATCAAACCCAATTCCTTGGATCAATTCTTGGTTAAATT 525202 Query 73857 GTGATAATGTGCAAGTTGCACCTCAAGAAACTGAAATTACATCGTACTTAGTTGGTCAAG 73916 |||| || | ||| || ||||||||||| ||||| | || || ||||| || ||| Sbjct 525203 CTGATTATATACAAACGGCCCCTCAAGAAACAGAAATCAGTTCATATTTAGTGGGCCAAA 525262 Query 73917 TTGACTC--AAGTTTGGAAGATGATGATTTCGATGAATTTGATTTATAAAAGGAATA 73971 |||| || |||| | | || | || ||| | ||||| | ||||||| ||||| Sbjct 525263 TTGAATCAGAAGTATCTA--ATCAAGAATTCAAAAAATTTAAACTATAAAATGAATA 525317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335060295341278