Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_018088.1
Length=104936
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 554 3e-153
>seq129631
Length=630463
Score = 554 bits (614), Expect = 3e-153
Identities = 1404/2118 (66%), Gaps = 23/2118 (1%)
Strand=Plus/Plus
Query 70642 TCAGTATCTCAAGTTGAATTGAAATCTCATATCCAATTTTATGAAGGTATGAAGACAGAA 70701
|| || |||||||||||||| || | ||| ||||||||| | ||| || || |
Sbjct 521705 TCTGTTTCTCAAGTTGAATTACGTTCACGTATTCAATTTTATAACAATATAAAAACTGTG 521764
Query 70702 GATATTCACGAAATAATCATTAAAGCAGCAGCAGATTTAATATCGGTTGACACTCCTGAT 70761
|||| || || | ||| |||||||| |||||||||||||| || | || || ||||||
Sbjct 521765 AATATACATGAGACAATTATTAAAGCTGCAGCAGATTTAATTTCTGAAGATACACCTGAT 521824
Query 70762 TATCAGTATCTCTCATCTCGTTTAGCCGTATTTCATTTACGTAAACAAGCCTATGGTGAT 70821
||||| ||| | || | | | || | |||||| | | ||| |||| || ||| |
Sbjct 521825 TATCAATATATGGCAGCAAGACTTGCTATTTTTCATCTTAGGAAAAAAGCTTACGGTCAA 521884
Query 70822 TTTGTACCACCTCGCCT-TATCAACCATATAGCTAAGTTGACAGATAGTGGTCATTATGA 70880
|||| ||||||| || ||||| | || || || || || || | |||||
Sbjct 521885 TTTGAACCACCTATTCTGTATCATC-ATGTAAAAAAAATGGTCAATTTAGGAAAATATGA 521943
Query 70881 TAAAGAAATTCTTG-AAGATTTTACCATTGGTGAAATTGAAGAATT-AGGTAATTACATT 70938
|| ||||| || || ||| | | || ||| || |||| | | | ||| ||
Sbjct 521944 CGAA-AAATTATTACAAAATTATTCTTTTAAAGAATATGTAGAAATGAATTCATTT-ATC 522001
Query 70939 CAGCATGACCGTGATATGAATATTGCCTATGCAGGTATTAAGCAATTAATCGGTAAGTAT 70998
| ||| ||||| |||||| || | ||||||| | || |||||| || ||||||
Sbjct 522002 GATCATTGGCGTGACATGAATTTTTCTTATGCAGCAGTAAAACAATTAGAAGGAAAGTAT 522061
Query 70999 TTGGTTCAGGACAGAGTTAATGGTATTATCTTTGAAACCCCTCAAATGCTTTATATGCTT 71058
|| | || | | |||| ||| || | ||||| | ||| | ||||||| ||
Sbjct 522062 TTATTACAAAATCGTGTTACTGGAGAAATATATGAAAGTGCACAATT--TTTATATATTT 522119
Query 71059 GTTGGTATG--TGTTTATACTCTAAAAAGTATAGCGGCAAAGTTCGTATGAATTACATCA 71116
| || || |||| |||||| | | | || ||||||||||||| ||
Sbjct 522120 TAATATCTGCATGCTTATTTTCTAAATACGAAAAA---AATATTCGTATGAATTATATTC 522176
Query 71117 AAGAGTGGTATGATGCAACAAGTACATTTGAGCTATCATTACCAACACCTATTATGGGTG 71176
| | ||| |||||| || ||| | |||| |||| ||||| |||||| |
Sbjct 522177 AGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAG 522236
Query 71177 GTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAGATTGACAGTGGCGATAGCC 71236
| ||| | || ||||| | ||||||||| |||||| ||||| ||| ||||
Sbjct 522237 GAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATT 522296
Query 71237 TAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTATCCAAACGTGCAGGTA 71296
|| | || |||||||| | | ||| ||||||| || ||||| || |||| ||||| |
Sbjct 522297 TAAACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAA 522356
Query 71297 TCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATACGCAATGGTGAAGCAG 71356
| || || || | ||| ||||||| || |||||||||||||| | ||||| ||||||
Sbjct 522357 TAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCAT 522416
Query 71357 TTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAATCTTGCTCTC 71416
||||||| || | || || || | || || ||||||| ||||| |||||||| ||||
Sbjct 522417 TTCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTC 522476
Query 71417 AGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCATTTAGAAGTTG 71476
| || || | | || || || || || | || ||||| || |||||| ||||| |||
Sbjct 522477 AAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTG 522536
Query 71477 AAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTACGTCATTTAG 71536
||| | ||||| || |||||||| | ||| ||||||| || | ||||||||| | |
Sbjct 522537 AAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTG 522596
Query 71537 ACTATGCTGTGCAATTCAATAAGCTTATGTACCAACGATTGATTACAGGTGGCAATATTA 71596
| |||||||| ||| | ||||| | ||||| ||| || || | ||| || ||||
Sbjct 522597 ATTATGCTGTACAAATTAATAAATTAATGTATCAAAGAATGCTACTAGGAAAAAAAATTA 522656
Query 71597 CATTGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCATTCTTTGCCGACCAAGATA 71656
|||| || ||| || ||| |||||| | | || || |||| ||| | |
Sbjct 522657 CATTATTTAGTCCTTCTGACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAAAAAA 522716
Query 71657 AGTTTGA--AAAGTTATATACTGAAGCTGAAGGTAATCCTATGATTATCCAAAAGTCAGT 71714
| ||| | ||| |||||| | || |||| ||| | || | |||| |||
Sbjct 522717 AATTTAAGGAAATTTATAT--TAAATATGAAAAAAATAGCAATATAAGAAAAAAA--AGT 522772
Query 71715 A--AAAGCTAGTGACTTATTTACATTGTTTGCACAAGAGCGAGCAGGTACAGGTCGTATC 71772
| || || | ||| || || || || | ||| ||||| || || ||||||
Sbjct 522773 ATTAATGCAATTGATTTGTTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGTATC 522832
Query 71773 TATCTTCAAAACGTAGATCACTGTAATACCAATAGCCCATTTATTGCAGAAGTTGCCCCT 71832
||| | ||||| |||||||| |||||| | |||| ||||||| | | || | || |
Sbjct 522833 TATATACAAAATGTAGATCATTGTAATTCACATAGTCCATTTAATTCTAAATTGGCAACA 522892
Query 71833 ATTCGTATGAGTAACTTATGCCTTGAAATTGCATTACCAACTGAACCTATGCAGGATATT 71892
|| | |||||| || | |||||| |||| || || |||| | | |||||
Sbjct 522893 ATAAGACAATCTAACTTGTGTTTAGAAATTACATTGCCTACAAAACCACTAAATAATATT 522952
Query 71893 AATAAGCCTGAAGGTGAAATTGCATTATGTACATTAGCTGCATTCAATCTTGGTGCCATT 71952
|| | | || ||||||||| | ||||| || | || ||||||| ||| |||
Sbjct 522953 GATGATAAAAATGGAGAAATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGTTTAATT 523012
Query 71953 AAAGATTTAGGTCGTATGGAAAAATTATCCGAATTAGTTATTAGAGCATTAGATGCTTTA 72012
|| ||||| | | | | ||||||| | || | | | || ||||||| ||
Sbjct 523013 AATAATTTAAATGATCTCAAGGAATTATCTATACTATCTGTACGCGCTTTAGATGAAATA 523072
Query 72013 CTTGATTACCAAGATTATCCAATACTAGCTGCTGAAAATGCTACCAAGCGAAGACGTACT 72072
| || || ||| | |||||| || || ||| |||| || | ||||||| ||
Sbjct 523073 TTAGAATATCAAAACTATCCAGTATTATGTGCAAAAAAATCTGCTGTTTCAAGACGTTCT 523132
Query 72073 TTAGGTGTTGGCATTATTAATTATGCTCATCACTTAGCTAAAAATGGTGTTAAATATTCT 72132
||||| |||| | ||||||| ||| || | ||||||||||| || |||||
Sbjct 523133 TTAGGAATTGGTGTAATTAATTTTGCATATTATTTAGCTAAAAACAAAGTACGCTATTCA 523192
Query 72133 GATGGCAGTGCCAACAATTTAACTCATGAACTCTTCGAAAGTTTTCAGTATTACCTATTG 72192
||||||||||| || |||||||| ||| || || ||| | |||||||| || |
Sbjct 523193 GATGGCAGTGCAAAAAATTTAACGCATAAAACTTTTGAAGCAATACAGTATTATTTACTA 523252
Query 72193 AAAGCAAGTTGTGATTTAGCCAAAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACT 72252
||||| ||||| |||||||||||| |||| ||||| ||| || | || | |
Sbjct 523253 AAAGCTTCCTGTGAATTAGCCAAAGAAAAAGGATCTTGTTTATTATTTAATCAAACTAAT 523312
Query 72253 TATTCACAGGGTATATTACCTATTGACCGCTATAATAAGTCAGTAGATGGTATTCATAGT 72312
|||| |||| | || ||||| ||||| || |||||| || || |
Sbjct 523313 TATTATTTAGGTAAGCTTCCAATTGATACATATAAAAAAGATGTAGATTCGATATGTAAT 523372
Query 72313 GAAGAGTTACATCTTCCGTGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGT 72372
||| |||||| | ||| | ||| || || | ||| ||||| || ||| |
Sbjct 523373 GAACCATTACATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGA 523432
Query 72373 AATTCTACTGTATCCTCATTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACA 72432
||||| ||| |||| | || ||||| ||||| |||||| |||||||||| ||
Sbjct 523433 AATTCCACTTTATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACT 523492
Query 72433 AATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTG 72492
|||||||||||||| || | ||||| | || || ||||| ||||||||| || ||
Sbjct 523493 AATGGTATTGAACCTCCAAGAGGTTTTGTCAGTATAAAAGCTTCTAAAGATGGAATGCTG 523552
Query 72493 AAGCAAGTAGTACCTCATATTGGTACAATGGCTA-ATGACTATGAATTGTTGTGGAATAT 72551
||||| || || | || | ||| | | |||| |||||||| | ||| ||||
Sbjct 523553 CGACAAGTGGTTCCAGA-ATATAAAAAATTGAAATATGAATATGAATTACTTTGGGATAT 523611
Query 72552 TCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCAGGC 72611
|||| |||| || || | ||| | || ||||| ||||| |||||| | ||||| |
Sbjct 523612 ACCAAATAATACAGGATACTTAGAACTTGTGGCAATTATGCAGAAGTTTATTGATCAATC 523671
Query 72612 AATCTCTGCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTAA 72671
|| || | ||||| |||||||| || | ||| ||||| ||| | || | ||
Sbjct 523672 TATTTCAGTTAACACTAATTATGATCCAAAACGATTTTTAAATGAAAAAATACCTATAAA 523731
Query 72672 GCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATTCTATTACCA 72731
||| || | | |||||| | || ||||| ||||| | ||||| | ||||| ||
Sbjct 523732 ACAACTTATATATGATTTACTTACAGCATATAAACTTGGAATAAAAACTCTTTATTATCA 523791
Query 72732 TAACACCCGTGATGGTGC 72749
|| || |||||||||||
Sbjct 523792 AAATACTCGTGATGGTGC 523809
Score = 228 bits (252), Expect = 5e-55
Identities = 705/1077 (65%), Gaps = 44/1077 (4%)
Strand=Plus/Plus
Query 72917 TACGACCAACAAAAGCTTAGTGCATTTGAAAAATTAATAGAAAAACAATTGAGCTTCTTT 72976
|| || |||||||| || | ||||||||| |||| ||||||||| | || |||
Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322
Query 72977 TGGCGACCTGATGAAATAGATGTATCAAAAGACCGTTCTGATTGGCAAAAAATGACTGAC 73036
||| |||| || ||||||||| |||| ||||| | |||| ||||| | ||
Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCT--- 524379
Query 73037 TCT---GAAAAGCATATTTTCATATCAAATCTTAAATACCAAACATTGCTTGATAGCATG 73093
||| ||||| |||||||| ||| ||| | ||||| ||||| || |||||| ||
Sbjct 524380 TCTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATT 524439
Query 73094 GCTGCACGTTCTGTTAATATGGTATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACA 73153
| | | | ||| || | || | || | || ||| | || ||| | ||||||
Sbjct 524440 CAAGGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACA 524499
Query 73154 TGGATTGAAACATGGGCATTTAGTGAAACTATTCACTCTCGCTCATATACTCATATCTTG 73213
||||||||||||||| | ||| || || ||||| || || |||||||| ||||| |
Sbjct 524500 TGGATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATT 524559
Query 73214 CGTAACCTTTTCGTAGATCCAAGTGAAGTATTTGATGATATTA---CAATTAACCCTGAA 73270
| || || | ||||| || |||||||||||||||| | | ||| ||
Sbjct 524560 AGAAATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAA-----AA 524614
Query 73271 ATATTAA--AACGTGCTGAAAGTATCGCCAAATACTTTGATGATGTGATACTGACAACTC 73328
| ||||| | ||||| ||| ||| | | || | |||| | | || | |||
Sbjct 524615 ACATTAATGATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAAC-- 524672
Query 73329 AGTTCATT--CAATCTCAAGGTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGT 73386
|| | ||| || | | || ||||| | || | | ||||| || | || | |
Sbjct 524673 AGCTTATTGGCATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAAT 524732
Query 73387 C--TCAAAGCGTAAGCTTAAAGAGCGACTTTATCTTGCCGTTTG--TGCTGTCAATGCCT 73442
| | || | || | ||| | |||| |||||| |||| | ||| || |
Sbjct 524733 CAATTTAAACTTAT--TAAAAAAAAGACTATATCTTT--GTTTAATTAGTGTAAACGTAC 524788
Query 73443 TAGAAGCTATCCGCTTTTACGTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGC 73502
||||||| || | |||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct 524789 TAGAAGCCATTAGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAA 524848
Query 73503 TACTTGAAGGTAATGCCAAGATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAA 73562
|| | ||||| ||||| || ||||| | |||| || || |||||||| || ||||| |
Sbjct 524849 TAATGGAAGGAAATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGA 524908
Query 73563 CTGGTACTCAGATGATTCTGAATAACTGGCGAACTGGCAAGGATGATCCTGAAA---TGC 73619
|||| ||||| ||| | |||| | || | | | | || |||| ||
Sbjct 524909 CTGGAACTCAACATATTTTAAATATTTT---AAATAACGAAAAAAATAACGAAAATATGA 524965
Query 73620 AAGAGA---TTGCAGAAGACCTTAAAGATGTAAGTCTTAAGATCTTTATGGATGTTGTTG 73676
|| | | || |||| | |||| | || |||| || ||||| || | |
Sbjct 524966 AAAATACTATTTTAGAATGCAGAGAAGAGGCAA---TTAAAATATTTATATCTGCTTCAG 525022
Query 73677 AAGAAGAAAAGCAATGGGCAAAATATCTATTCAAAGATGGGTCAATGATCGGTCTTAATG 73736
|| ||||||| ||||||| |||||| | || ||||||| || ||| | || | |||
Sbjct 525023 AACAAGAAAAAAAATGGGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATC 525082
Query 73737 AAGAAATACTTTGCCAGTACGTTGAGTACATTGCTAATCATCGTTTACATAGCCTAGGCT 73796
|||| ||| | || || || | || || ||| ||||| |||| | ||| |||| |
Sbjct 525083 AAGATATATTATGTCAATATATAGAATATATTACTAATGTTCGTATGCATGCAATAGGTT 525142
Query 73797 TTGAAAAACCATTTGATATTAAGTCTAATCCTATTCCGTGGATTAGCTCTTATCTAACAA 73856
|| ||| || ||||| | || || || || ||||| ||||| | |||| |||
Sbjct 525143 TTAAAATGCCTTTTGAAAAAAAATCAAACCCAATTCCTTGGATCAATTCTTGGTTAAATT 525202
Query 73857 GTGATAATGTGCAAGTTGCACCTCAAGAAACTGAAATTACATCGTACTTAGTTGGTCAAG 73916
|||| || | ||| || ||||||||||| ||||| | || || ||||| || |||
Sbjct 525203 CTGATTATATACAAACGGCCCCTCAAGAAACAGAAATCAGTTCATATTTAGTGGGCCAAA 525262
Query 73917 TTGACTC--AAGTTTGGAAGATGATGATTTCGATGAATTTGATTTATAAAAGGAATA 73971
|||| || |||| | | || | || ||| | ||||| | ||||||| |||||
Sbjct 525263 TTGAATCAGAAGTATCTA--ATCAAGAATTCAAAAAATTTAAACTATAAAATGAATA 525317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 335060295341278
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