Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq129631 159 4e-34 >seq129631 Length=630463 Score = 159 bits (176), Expect = 4e-34 Identities = 314/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 131891 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCT 131950 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 522161 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 522220 Query 131951 ACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATT 132010 || || |||||| |||| | | || |||||||| || || | |||||| | ||| Sbjct 522221 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 522280 Query 132011 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 132067 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 522281 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 522337 Query 132068 ATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 132124 ||||| ||||||| || ||||| || |||| |||| |||| || || | || || Sbjct 522338 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 522397 Query 132125 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 132184 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 522398 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 522454 Query 132185 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 132244 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 522455 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 522514 Query 132245 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 132304 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 522515 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 522574 Query 132305 GAAAACCGTATTCGACATATGGACTACGGAATTCAAATTAAT 132346 ||||| | | || ||| | || || | | ||||||||| Sbjct 522575 GAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAAT 522616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540168750247520