Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 132 1e-25
seq10 84.2 5e-11
>seq129631
Length=630463
Score = 132 bits (146), Expect = 1e-25
Identities = 403/608 (66%), Gaps = 21/608 (3%)
Strand=Plus/Plus
Query 226999 TTAGAAAAGCTCACTGAATCTCAAAAAAGTTTC----TTCTGGACACCTGATGAGGTAGA 227054
|| ||||| || | |||| ||| || |||| || |||| ||| || || ||||
Sbjct 524287 TTTGAAAAACTAATTGAA----AAACAACTTTCATTTTTTTGGAGACCAGAAGAAATAGA 524342
Query 227055 TTTATCTAAAGACCGAATAGATTTTAAATCACTTACC-GATCACGAGAAGCACATATTTA 227113
|||||||||||| ||||||||||| || | ||||| | |||| || || || ||||
Sbjct 524343 TTTATCTAAAGATAGAATAGATTTTCAA-AATTTACCTTCTAACGAAAAACATATTTTTA 524401
Query 227114 CTTCCAATCTAAAACGGCAAATTTTATTAGATTCTGTTCAAGGTAGGGGTCCAAATTTAG 227173
||| ||||| |||| |||| | |||||| ||||||| || |||| || | |
Sbjct 524402 TAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAAGGAAGAAGTCCTAACATCG 524461
Query 227174 TACTGTTGCC-ATATGCATCATTACCAGAACTTGAAAATTTTATTGAAACATGGTCATTT 227232
| || || ||| | || | || ||| | |||| | |||||||||||||| |
Sbjct 524462 CTTTTTTACCTATA-GTTTCTATTCCCGAATTAGAAACATGGATTGAAACATGGTC---T 524517
Query 227233 TTTGAAGGTTCTATACATAGTAAATCATATACACATATTATTCGAAATATATATCCA-AA 227291
||| || | || ||| |||||||||||||| ||| ||||||| ||| | |
Sbjct 524518 TTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGAAATAT-TATTAATCA 524576
Query 227292 CCCAAGTGAAGTTTTTGATACTATGTTGGATATTCCAGAAATTACATCAT-GTGCAACTG 227350
||| || || |||||| ||| | || | | | |||| || || ||||| |
Sbjct 524577 TCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTA-ATGATCGTGCAGAAG 524635
Query 227351 ATATTTCAAAATATTATGATGATTTAGATAACTATGGAACTTATTATAAGTTATTGGGTG 227410
||||||| | ||||||||| | ||| ||| | |||||| | ||| | || |
Sbjct 524636 ATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGGCATTTACTTGGAG 524695
Query 227411 AAGGCACTCACACCGTTAATGGTGAAAAAATTGTTGTTGATATGTATGAGCTAAAGAAAA 227470
|||| ||| | ||||||| ||||||||| | || | | |||| ||||
Sbjct 524696 AAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAAACTTATTAAAAAAAA 524755
Query 227471 AACTATGGCTATGTATTAACAGTATTAATATTCTAGAAGGTATTCGTTTTTATGTTTCAT 227530
||||| || ||| | | ||| | || | ||||||| ||| | ||||| ||| |
Sbjct 524756 GACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATTAGATTTTACGTTAGTT 524815
Query 227531 TTGCGTGTTCCTGGGCATACGCCGAGA-ACAATCAACTTGAGGGGAATGCTAAAATAATT 227589
|||| ||||| | |||| || || | | || || | || || ||||||||||| ||
Sbjct 524816 TTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAA-TGGAAGGAAATGCTAAAATTATC 524874
Query 227590 AGATTGAT 227597
|||| ||
Sbjct 524875 CGATTAAT 524882
Score = 111 bits (122), Expect = 4e-19
Identities = 412/641 (64%), Gaps = 20/641 (3%)
Strand=Plus/Plus
Query 224379 TCTTCCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGT 224438
||| || || || |||||| | ||| || | || ||||| |||||||||||||| ||
Sbjct 522214 TCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGT 522273
Query 224439 AGTTA--TGAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATG 224496
|||| |||| || | |||| | || || |||| |||| | ||||| || |
Sbjct 522274 -GTTAATTGAATGT-GCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTA 522331
Query 224497 CAGTATATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGT 224556
| ||| ||||| | ||| || | || | ||| ||||| | || || | ||
Sbjct 522332 AAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGA 522391
Query 224557 -------TCAGAAATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACA 224609
|||||||| || || || ||||||| |||| ||||| || || |
Sbjct 522392 AGTCCTATCAGAAAT-------GGAGAAGCATTTCATACCGGATGTATTCCTTTT-TATA 522443
Query 224610 CGCAGTTGCTAAAA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAA 224668
|| || | || | || |||||||||||||||||||| || | || || || ||||
Sbjct 522444 AACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAA 522503
Query 224669 CAGTCCACTTCCCATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACA 224728
| || | |||| | |||||| || ||||| || | |||| |||| ||||| |
Sbjct 522504 CTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATA 522563
Query 224729 AAGGTACAGAAGTATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTT 224788
||| | |||| | | | || ||||| | |||||| | | ||||||||||||
Sbjct 522564 GAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAATAAATTAA 522623
Query 224789 TCTATCAACGCTTGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTG 224848
| |||||| | || | | | ||| | ||||| || || ||| ||| ||||||
Sbjct 522624 TGTATCAAAGAATGCTACTAGGAAAAAAAATTACATTATTTAGTCCTTCTGACGTTCCTA 522683
Query 224849 GTTTGTATGATGCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATG 224908
|| ||| | || | | || ||| |||||||| | | | || | ||| ||||
Sbjct 522684 ACTTATATAAATTTTTTTTCTCCGATCAAAAAAAATTTAAGGAAATTTATATTAAATATG 522743
Query 224909 AAGCTGATCCAAATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAA 224968
|| || ||||| | || |||| ||| ||| | || |||||| | | | |
Sbjct 522744 AAAAAAATAGCAATATAAGAAAAAAAAGTATTAATGCAATTGATTTGTTCTGTTTAATTA 522803
Query 224969 TGAATGAACGTTCTGAAACTGGACGTATCTATATCCAGAAT 225009
|| ||| | | |||||||||||||||||| || |||
Sbjct 522804 TGCGAGAAAGAGCATCAACTGGACGTATCTATATACAAAAT 522844
Score = 96.9 bits (106), Expect = 8e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574
||||||||||||||| |||||||||| |||||||||||| || |||||| |||||| | |
Sbjct 442753 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCAATC 442694
Query 324575 CCGTTTAGCTCCA 324587
||| |||||||||
Sbjct 442693 CCGCTTAGCTCCA 442681
>seq10
Length=712180895
Score = 84.2 bits (92), Expect = 5e-11
Identities = 64/75 (85%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479
||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct 692363701 GCGGAGTAGAGCAGTTTGGTAGCTCACAAGGCTCATAACCTTGAGGTCACG---GGTTCG 692363757
Query 324480 AATCCCACCTCCGCA 324494
| |||| |||||||
Sbjct 692363758 ATTCCCGTCTCCGCA 692363772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1145397607932732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |