Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq129631 132 1e-25 seq10 84.2 5e-11 >seq129631 Length=630463 Score = 132 bits (146), Expect = 1e-25 Identities = 403/608 (66%), Gaps = 21/608 (3%) Strand=Plus/Plus Query 226999 TTAGAAAAGCTCACTGAATCTCAAAAAAGTTTC----TTCTGGACACCTGATGAGGTAGA 227054 || ||||| || | |||| ||| || |||| || |||| ||| || || |||| Sbjct 524287 TTTGAAAAACTAATTGAA----AAACAACTTTCATTTTTTTGGAGACCAGAAGAAATAGA 524342 Query 227055 TTTATCTAAAGACCGAATAGATTTTAAATCACTTACC-GATCACGAGAAGCACATATTTA 227113 |||||||||||| ||||||||||| || | ||||| | |||| || || || |||| Sbjct 524343 TTTATCTAAAGATAGAATAGATTTTCAA-AATTTACCTTCTAACGAAAAACATATTTTTA 524401 Query 227114 CTTCCAATCTAAAACGGCAAATTTTATTAGATTCTGTTCAAGGTAGGGGTCCAAATTTAG 227173 ||| ||||| |||| |||| | |||||| ||||||| || |||| || | | Sbjct 524402 TAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAAGGAAGAAGTCCTAACATCG 524461 Query 227174 TACTGTTGCC-ATATGCATCATTACCAGAACTTGAAAATTTTATTGAAACATGGTCATTT 227232 | || || ||| | || | || ||| | |||| | |||||||||||||| | Sbjct 524462 CTTTTTTACCTATA-GTTTCTATTCCCGAATTAGAAACATGGATTGAAACATGGTC---T 524517 Query 227233 TTTGAAGGTTCTATACATAGTAAATCATATACACATATTATTCGAAATATATATCCA-AA 227291 ||| || | || ||| |||||||||||||| ||| ||||||| ||| | | Sbjct 524518 TTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGAAATAT-TATTAATCA 524576 Query 227292 CCCAAGTGAAGTTTTTGATACTATGTTGGATATTCCAGAAATTACATCAT-GTGCAACTG 227350 ||| || || |||||| ||| | || | | | |||| || || ||||| | Sbjct 524577 TCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTA-ATGATCGTGCAGAAG 524635 Query 227351 ATATTTCAAAATATTATGATGATTTAGATAACTATGGAACTTATTATAAGTTATTGGGTG 227410 ||||||| | ||||||||| | ||| ||| | |||||| | ||| | || | Sbjct 524636 ATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGGCATTTACTTGGAG 524695 Query 227411 AAGGCACTCACACCGTTAATGGTGAAAAAATTGTTGTTGATATGTATGAGCTAAAGAAAA 227470 |||| ||| | ||||||| ||||||||| | || | | |||| |||| Sbjct 524696 AAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAAACTTATTAAAAAAAA 524755 Query 227471 AACTATGGCTATGTATTAACAGTATTAATATTCTAGAAGGTATTCGTTTTTATGTTTCAT 227530 ||||| || ||| | | ||| | || | ||||||| ||| | ||||| ||| | Sbjct 524756 GACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATTAGATTTTACGTTAGTT 524815 Query 227531 TTGCGTGTTCCTGGGCATACGCCGAGA-ACAATCAACTTGAGGGGAATGCTAAAATAATT 227589 |||| ||||| | |||| || || | | || || | || || ||||||||||| || Sbjct 524816 TTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAA-TGGAAGGAAATGCTAAAATTATC 524874 Query 227590 AGATTGAT 227597 |||| || Sbjct 524875 CGATTAAT 524882 Score = 111 bits (122), Expect = 4e-19 Identities = 412/641 (64%), Gaps = 20/641 (3%) Strand=Plus/Plus Query 224379 TCTTCCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGT 224438 ||| || || || |||||| | ||| || | || ||||| |||||||||||||| || Sbjct 522214 TCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGT 522273 Query 224439 AGTTA--TGAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATG 224496 |||| |||| || | |||| | || || |||| |||| | ||||| || | Sbjct 522274 -GTTAATTGAATGT-GCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTA 522331 Query 224497 CAGTATATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGT 224556 | ||| ||||| | ||| || | || | ||| ||||| | || || | || Sbjct 522332 AAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGA 522391 Query 224557 -------TCAGAAATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACA 224609 |||||||| || || || ||||||| |||| ||||| || || | Sbjct 522392 AGTCCTATCAGAAAT-------GGAGAAGCATTTCATACCGGATGTATTCCTTTT-TATA 522443 Query 224610 CGCAGTTGCTAAAA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAA 224668 || || | || | || |||||||||||||||||||| || | || || || |||| Sbjct 522444 AACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAA 522503 Query 224669 CAGTCCACTTCCCATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACA 224728 | || | |||| | |||||| || ||||| || | |||| |||| ||||| | Sbjct 522504 CTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATA 522563 Query 224729 AAGGTACAGAAGTATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTT 224788 ||| | |||| | | | || ||||| | |||||| | | |||||||||||| Sbjct 522564 GAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAATAAATTAA 522623 Query 224789 TCTATCAACGCTTGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTG 224848 | |||||| | || | | | ||| | ||||| || || ||| ||| |||||| Sbjct 522624 TGTATCAAAGAATGCTACTAGGAAAAAAAATTACATTATTTAGTCCTTCTGACGTTCCTA 522683 Query 224849 GTTTGTATGATGCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATG 224908 || ||| | || | | || ||| |||||||| | | | || | ||| |||| Sbjct 522684 ACTTATATAAATTTTTTTTCTCCGATCAAAAAAAATTTAAGGAAATTTATATTAAATATG 522743 Query 224909 AAGCTGATCCAAATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAA 224968 || || ||||| | || |||| ||| ||| | || |||||| | | | | Sbjct 522744 AAAAAAATAGCAATATAAGAAAAAAAAGTATTAATGCAATTGATTTGTTCTGTTTAATTA 522803 Query 224969 TGAATGAACGTTCTGAAACTGGACGTATCTATATCCAGAAT 225009 || ||| | | |||||||||||||||||| || ||| Sbjct 522804 TGCGAGAAAGAGCATCAACTGGACGTATCTATATACAAAAT 522844 Score = 96.9 bits (106), Expect = 8e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| |||||||||||| || |||||| |||||| | | Sbjct 442753 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCAATC 442694 Query 324575 CCGTTTAGCTCCA 324587 ||| ||||||||| Sbjct 442693 CCGCTTAGCTCCA 442681 >seq10 Length=712180895 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| Sbjct 692363701 GCGGAGTAGAGCAGTTTGGTAGCTCACAAGGCTCATAACCTTGAGGTCACG---GGTTCG 692363757 Query 324480 AATCCCACCTCCGCA 324494 | |||| ||||||| Sbjct 692363758 ATTCCCGTCTCCGCA 692363772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145397607932732